Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00012 ATGGGCTTTTTCCGCCGACTCTTTCGCGCCAAAAAAAAACCCACACAAACTCCGACTCCTTCCATAACGCCCAACAGGAGATGGACCTTCGCCAAACACCCACGCTCCTCCACCTCCTCCTCCGCCCTCAACCACCACTGCGACCCCTCCTCCTTAGACGCCAACAAGCATGCCATCGCCGTCGCAGCCGCCACTGCAGCCGTTGCGGAGGCCGCTCTCGCAGCTGCCCACGCCGCCGCCGAGGTTGTTCGCCTCACGAGCGCCGGAGCTGCCCCAACTACTCGAAGGCCCGCTGCAGCCGTTAAGATACAATCGACATTTCGTGGTTACTTGGCAAGGAGGGCATTGAGAGCGCTAAAAGCTTTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAGACGGCAGATATGCTAAGGCGCATGCAAACATTGGTGCGACTCCAGGCACAGGCACGTGCCACTCGTGTCCTCTCACACACTATGCACTCTTTCAAGCCTTCACTTTCCCATTACCCTGTTCCTGAAGAATATGAGCACCACCTTGGTGTCTATAGTACAAAATTTGATGGATCTTCTATTTTGAAGAGATGTAGTTCTAATGCGAACTTCAGAAACAGTGAGGGGGAGAGGGCACGGTTAGAACGATGGATGGAAGAAAGGGAAAACAGAGAGAGAGAAAATCATGAGTATGAGAAGAAGATGAGTTACAAGATTCTGGAAGTAGATACATGGACACCACGACTTAGCTCATCATTGAAAGGAAAAGAAGAAGGATTATTATATTCAAGAACTGCGGATAACAGCCCGCAAGCATCATGTAGGAGCAGGAACGGTCCCTTTACACCGACGAGGAGCGAGTGTTCCTTCCATGGCTATGCAGGGCACCCCAACTACATGTCTAACACACTCTCTTCTACAGCTAAGGTTAGATCTCAGAGTGCACCAAGACAAAGACTCCACTATGATAGATTCGGTTACGGTTACGGATACGGATATGGATACGGTTATTCCACCACCAATAATACTGTTGTTCAGGGTGTTTGGGATGTCACACATGATAATAATCATAATCGTCATTCACATTCGAGGAGCAAGAAGGCGCATCTACCACCACCCTCCAATAGTAGTCGTTTCAATAGACTTGGGACTAGCAATTTAAGGTGA 1176 0.4974 MGFFRRLFRAKKKPTQTPTPSITPNRRWTFAKHPRSSTSSSALNHHCDPSSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSAGAAPTTRRPAAAVKIQSTFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQAQARATRVLSHTMHSFKPSLSHYPVPEEYEHHLGVYSTKFDGSSILKRCSSNANFRNSEGERARLERWMEERENRERENHEYEKKMSYKILEVDTWTPRLSSSLKGKEEGLLYSRTADNSPQASCRSRNGPFTPTRSECSFHGYAGHPNYMSNTLSSTAKVRSQSAPRQRLHYDRFGYGYGYGYGYGYSTTNNTVVQGVWDVTHDNNHNRHSHSRSKKAHLPPPSNSSRFNRLGTSNLR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00012 391 Pfam IQ calmodulin-binding motif 120 137 IPR000048 GO:0005515
Stsc90633g00012 391 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515
Stsc90633g00012 391 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Stsc90633g00012 391 Gene3D - 94 149 - -
Stsc90633g00012 391 Coils Coil 210 237 - -
Stsc90633g00012 391 SMART iq_5 95 117 IPR000048 GO:0005515
Stsc90633g00012 391 SMART iq_5 118 139 IPR000048 GO:0005515
Stsc90633g00012 391 MobiDBLite consensus disorder prediction 14 45 - -
Stsc90633g00012 391 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Stsc90633g00012 391 PANTHER IQ-DOMAIN 5-RELATED 21 364 - -
Stsc90633g00012 391 MobiDBLite consensus disorder prediction 371 391 - -
Stsc90633g00012 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 141 IPR027417 -
Stsc90633g00012 391 Pfam Protein of unknown function (DUF4005) 269 323 IPR025064 -
Stsc90633g00012 391 MobiDBLite consensus disorder prediction 1 45 - -
Stsc90633g00012 391 MobiDBLite consensus disorder prediction 356 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00012 Stsc-Chr90633 123401 126334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00012 1 324 IQD Protein Family AT5G07240 48.703 1.17e-60 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00012 - - ahf:112711676 405.601