Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00007 ATGCGGCCTATCTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCTGAGCTGGAGCGGCTTTTCAAGCGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATTTATATGGAAGATGACAGAGATGCTGAGGCTGCAATTCGTGCCCTCGATCGTATTGAATTTGGTCGGAAGGGGCGCAGGCTTCGTGTTGAATGGACAAAGCATGAGCGTGGCATCAGAAGGCCTGCTAGTTCAAGAAGATCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTGATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGCGGCACTTTGAGCCATATGGTAAGATAACTAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTCCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGGGTTATTTCAGTTGAGTTTGCTGTTAAAGATGATGATGATAGGCGAGGTGGATATAGTCCTGGGAGAGGTCACGATCGCCAGCGTGACAGGAGCCGTGACGGAAGGCGTTCACCGAGTCCATATCGCAGAGAAAGGGGTAGCCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGATAGGGGTAGCCCTGACTATGGCCGAGGCCGCAGCCGTAGCCGTAGCCGTAGTCCCCTTCGAAGAGAGCAGCAAGCTAGTCCTGCTTATGTGCGTAGAAGCCCTAGTCCATATAGAAGAGAGAGGGATGGCTCTGAACCAGCACGTGGCTCTAGCCGCAGCCCTTACCACAAAGAGCGTGGGAGAGCTGACCATGGAATCTCTCCTTCCCATAGTCCTGATGGAAGGGAGACAAGCCCCCAAAATGGCCGTGTTCCTAGTCGTAGTCCTTACGATATTGAGAAGGCCAGCCCTGGAAATGGCCATGAGTCCCGGGATAGTCCTGATGGAAAAGGGAACCCTAGCCCTTACAACGGTTACGAAGGAAGCCCAAACACGGTACCTGAGCCTAGGGACAGCCCTAACTATGGTGGTCCTGAAAGTCCCATGCATGAAACATACCGCAGTCAGTCACCCCCTGCAGAAGAATGA 1116 0.5027 MRPIFCGNFEYDARQSELERLFKRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRIEFGRKGRRLRVEWTKHERGIRRPASSRRSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKITSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGYSPGRGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRDRGSPDYGRGRSRSRSRSPLRREQQASPAYVRRSPSPYRRERDGSEPARGSSRSPYHKERGRADHGISPSHSPDGRETSPQNGRVPSRSPYDIEKASPGNGHESRDSPDGKGNPSPYNGYEGSPNTVPEPRDSPNYGGPESPMHETYRSQSPPAEE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00007 371 MobiDBLite consensus disorder prediction 167 371 - -
Stsc90633g00007 371 SMART rrm1_1 95 161 IPR000504 GO:0003723
Stsc90633g00007 371 SMART rrm1_1 3 70 IPR000504 GO:0003723
Stsc90633g00007 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Stsc90633g00007 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 158 IPR000504 GO:0003723
Stsc90633g00007 371 Gene3D - 87 173 IPR012677 -
Stsc90633g00007 371 Gene3D - 1 86 IPR012677 -
Stsc90633g00007 371 MobiDBLite consensus disorder prediction 250 286 - -
Stsc90633g00007 371 FunFam Serine/arginine-rich splicing factor RS31 86 176 - -
Stsc90633g00007 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 165 IPR000504 GO:0003723
Stsc90633g00007 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Stsc90633g00007 371 SUPERFAMILY RNA-binding domain, RBD 75 171 IPR035979 GO:0003676
Stsc90633g00007 371 CDD RRM1_AtRSp31_like 2 73 - -
Stsc90633g00007 371 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Stsc90633g00007 371 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Stsc90633g00007 371 MobiDBLite consensus disorder prediction 167 235 - -
Stsc90633g00007 371 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 95 299 - -
Stsc90633g00007 371 MobiDBLite consensus disorder prediction 287 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00007 Stsc-Chr90633 88553 92720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00007 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 24.044 7.01e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00007 K12893 - gmx:100781534 592.808