Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00005 ATGGACCATGGCAACTACCCTCTTCCACCTCCAATACAAATCCCATCCTCTTCAGCATCACCAGCCACTACTCCAACCCCGTCCCCCTCCGCCACCGTGAGATACCGAGGAACACGGTGCCGGAGTGGGAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAGACGACGCGCATTTGGCTGGGGACATACCCAACACCTGAGATGGCTGCTGCTGCTTACGATGTTGCTGCTCTTGCCTTGAAGGGTCCCGATGCGCTTCTCAACTTCCCCAATTCCATACTCTCTTACCCTATCCCTGCCTCATTGTCTCCTCCTGATATTCGCGCCGCTGCCGCCGCCGCCGCTCAGGCTAGGCTTCCGAGGCCACCGCAGCAGAACCCTCCAGAGGGTGCTAGTACTGCTGGGGATGGTGGTGGCGGTGGCAGTGGTAACGTTATTGGTGAAGGGTCTTCTTCCTCTTTGTGTGGAGAAGGAGGAGGGATGATGGTTGGTGAATACATTGATGAGGATGAACTTCTGAACATGCCGAGTGTGATTGAAGACATGGCCAGAGGAATGCAGGTTAGCCCTCCAAGGATGCACTCTTTCTCCTCCGATGACTCCCCTGGGAATTCCGATTTAGATACCCTTTGGAGTTTTTGA 642 0.553 MDHGNYPLPPPIQIPSSSASPATTPTPSPSATVRYRGTRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDALLNFPNSILSYPIPASLSPPDIRAAAAAAAQARLPRPPQQNPPEGASTAGDGGGGGSGNVIGEGSSSSLCGEGGGMMVGEYIDEDELLNMPSVIEDMARGMQVSPPRMHSFSSDDSPGNSDLDTLWSF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00005 213 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Stsc90633g00005 213 MobiDBLite consensus disorder prediction 191 213 - -
Stsc90633g00005 213 MobiDBLite consensus disorder prediction 1 34 - -
Stsc90633g00005 213 MobiDBLite consensus disorder prediction 186 213 - -
Stsc90633g00005 213 SMART rav1_2 34 96 IPR001471 GO:0003700|GO:0006355
Stsc90633g00005 213 FunFam Ethylene-responsive transcription factor 2 33 91 - -
Stsc90633g00005 213 ProSiteProfiles AP2/ERF domain profile. 34 90 IPR001471 GO:0003700|GO:0006355
Stsc90633g00005 213 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Stsc90633g00005 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 181 - -
Stsc90633g00005 213 MobiDBLite consensus disorder prediction 111 157 - -
Stsc90633g00005 213 MobiDBLite consensus disorder prediction 17 34 - -
Stsc90633g00005 213 Pfam AP2 domain 39 82 IPR001471 GO:0003700|GO:0006355
Stsc90633g00005 213 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00005 Stsc-Chr90633 70990 71631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00005 35 213 AP2-EREBP Transcription Factor Family AT5G52020 51.934 2.22e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90633g00005 AP2 5.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00005 - - gmx:100776717 219.164