Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00002 ATGGAGAATTCAGGGAGCGGAAACGACTCTTTGAACCTCTGCAATGGCAGTCATGACCCGTTAAATTGGGTCATGGCTGCAGATGCCCTAAAAGGCAGCCACCTCGACGAGGTAAAGCGGATGGTAGAAGAGTATAGGAAGAAGGACGTGTTATTGGGTGGTAAGGGACTCACCATATCCCAAGTGGCGGCGGTGGCCACAAATGATGATGGTGGTGTGGCGGTGGCTCTGGCGGAGGAGGCACGTGCCGGGGTAAAGGCAAGCAGTGATTGGGTGAGGGAGAGCATGGAGAAAGGTACGGATAGCTATGGCGTTACCACAGGGTTTGGTGCAACTTCACACAGGAGAACCAAGCAAGGTGGTGCCCTCCAAAATGAACTCATAAGATTCTTGAATGCTGGAATTTTCGGCAGTGGCACAGAATCTTGTCACACATTGTCTCACACAGCAACAAGAGCAGCCATGTTGGTTAGGATCAACACATTGCTTCAAGGATATTCCGGAATCAGATTCGAGATCCTAGAAGCCATTACAAAATTCCTCAACCACAACATTACACCATGCATCCCTCTCCGCGGCACCATCACCGCCTCTGGCGACCTCGTCCCGTTGTCCTATGTAGCCGGGCTTCTAATAGGAAGGCCCAACTCCAAGTCAATTGGGCCCAACGGACAATTCCTCAATGCCAAAGAGGCCTTCCAGCTGGCCGGAATCAACAGCGGTTTCTTTGACTTGCAACCCAAGGAAGGGTTAGCTCTCGTCAACGGAACTGCTGTTGGTTCTGGCCTAGCTTCCATGGTACTTTTCGAGGCCAACATACTTGCCGTCCTCTCGGAGGTTTTATCGGCGATATTCGCCGAAGTTATGCAGGGGAAACCGGAGTTTACAGATCATTTAACTCATAAATTGAAGCATCATCCGGGTCAAATTGAAGCTGCAGCTATAATGGAACATATCTTGGATGGAAGCTCATATGTTAAGGCTGCAGAGAAGGTTCATGAGATTGATCCTCTTCAGAAGCCGAAACAAGATAGATACGCTCTTCGAACTTCGCCTCAATGGTTGGGGCCACAGATTGAAGTGATTCGCCATGCCACCAAGATGATTGAGAGGGAGATCAACTCTGTCAATGATAATCCATTGATTGATGTGTCAAGGAATAAGGCTCTTCATGGTGGGAACTTCCAAGGGACTCCAATAGGTGTATCCATGGATAACACACGCCTTGCCATAGCTTCCATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTGAATGACTTCTACAACAATGGTTTGCCTTCTAATTTAACAGCTAGCAGGAATCCAAGCTTGGATTATGGCTTTAAAGGAGCAGAAATAGCAATGGCTTCTTATTGCTCTGAGCTGCAGTACCTTGCAAATCCTGTGACAAATCATGTTCAGAGTGCTGAACAACATAACCAAGATGTGAACTCCTTGGGATTGATCTCATCAAGAAAGACAGCAGAGGCAGTTGATATATTGAAACTAATGTCATCAACTTACTTGGTAGCATTGTGTCAAGCCATTGATCTAAGGCATATAGAGGAGAATCTGAAGAACACTGTGAAGAACACGGTTAGCCAAGTGGCCAAACGGGTGCTCACAATGGGGGTAAATGGTGAGTTGCATCCCTCGAGGTTCTGCGAAAAGGACTTGCTCAAGGTCGTGGATCGGGAGTATGTCTTCGCCTACGCCGATGATCCGTGCAGCGCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTACTGGTTGATCATGCATTGCAGAATGGTGAGAGAGAGTTCAATTCAAGCACCTCAATTTTCCAAAAGATTGGAGCCTTTGAGCAAGAACTGAAGGCCCTTTTGCCCAAAGAGATTGAGAGTGCAAGGATTGGAGTTGAGAATGGAAGTGCTGCTGTTCCTAACAGAATCAAGGAGTGTAGATCATATCCACTTTACAAGTTTGTGAGAGAAAATTTGGGAACAGATTTGCTGACAGGTGAGAAAGTGAGGTCCCCTGGTGAGGAATGTGATAAGGTATTCACTGCTATGTGTCAAGGAAAATTGATTGATCCAATGTTGGAATGTCTAAAGGAGTGGAATGGTGCTCCTCTACCAATATGCTAG 2136 0.47 MENSGSGNDSLNLCNGSHDPLNWVMAADALKGSHLDEVKRMVEEYRKKDVLLGGKGLTISQVAAVATNDDGGVAVALAEEARAGVKASSDWVRESMEKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGSGTESCHTLSHTATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCIPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQFLNAKEAFQLAGINSGFFDLQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAEKVHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTYLVALCQAIDLRHIEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCSATYPLMQKLRQVLVDHALQNGEREFNSSTSIFQKIGAFEQELKALLPKEIESARIGVENGSAAVPNRIKECRSYPLYKFVRENLGTDLLTGEKVRSPGEECDKVFTAMCQGKLIDPMLECLKEWNGAPLPIC 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00002 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Stsc90633g00002 711 Pfam Aromatic amino acid lyase 57 533 IPR001106 -
Stsc90633g00002 711 Gene3D Fumarase/aspartase (Central domain) 258 706 - -
Stsc90633g00002 711 FunFam Phenylalanine ammonia-lyase 524 645 - -
Stsc90633g00002 711 Gene3D - 11 257 IPR024083 -
Stsc90633g00002 711 FunFam Phenylalanine ammonia-lyase 258 552 - -
Stsc90633g00002 711 SUPERFAMILY L-aspartase-like 19 711 IPR008948 GO:0003824
Stsc90633g00002 711 CDD PAL-HAL 55 521 IPR001106 -
Stsc90633g00002 711 FunFam Phenylalanine ammonia-lyase 10 257 - -
Stsc90633g00002 711 PANTHER HISTIDINE AMMONIA-LYASE 16 711 IPR001106 -
Stsc90633g00002 711 NCBIfam phenylalanine ammonia-lyase 19 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Stsc90633g00002 711 Gene3D - 524 645 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00002 Stsc-Chr90633 35618 40526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00002 19 711 Monolignol Biosynthesis Gene Families AT3G53260 83.983 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00002 K10775 - gmx:100818777 1281.16