LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90632g00030	ATGGATAGCACAACAAATACCTTGATGCAAAGATATGAATTGGGAAGGTTACTAGGCCAAGGAACCTTTGGCAAGGTCTACTATGCGAGGAGTTCGATAACTAACCAGAGTGTTGCCATCAAAGTTATTGACAAGGATAAAGTTATTAGAACCGGGCAATGCGAGCGGATTAAGAGGGAAGTGACTATTATGAGACTAGTTCGTCATCCGTATATAATTCAGCTTCTTGAGATCATGGCCACCAAGAGCAAGATTTACTTTGTTATGGAGTATGCGAAAGGCGGCGAGCTTTTTGACCTGGTGGCCAAAGGAAAGCTCAAAGAAGATGATGCTCACAAGTACTTTAGGCAGCTCGTGAAAGCAGTCGATTTTTGTCACAGCCGAGGCGTGTACCATAGAGATATAAAGCCGGAGAATCTTCTGTTGGATGAGAATGAGGATCTTAAGGTGTCGGATTTCGGGTTGAGTGCGTTGGCCGAATCGAAAAGGAAGGACGGATTGCTGCATACAACTTGTGGAACGCCTTCCTATGTTGCCCCTGAAGTGATTAGAAGGAAAGGCTATGATGGTACAAAAGCAGATATTTGGTCCTGTGGAGTAGTTCTCTTTGTCCTATTGGCAGGGTATCTACCTTTCCATGATTCAAATTTGATTGAGATGTATAGAAAGATAAGCAAAGGCGAATTCACTTGTCCGAGTTGGTTCCCGAACAATGTCCGGCGGCTATTGTGCAAGATGTTGGATCCAGATCCAGAGAATAGGGCTACTGTGGCTAAGATAAGGGAGTCTTCTTGGTTTAGGAAAGGGCCAAATTCTAGGCAGAAAAAGCTTGAAGTTGAAAACAAGGCCATAACAAATCCTGCTGACCAAAGCCATGAAAGTGATAATGTAGTGGCTGAATCGAATCAAGAGCCGGTCAGTGCTGCTGCTGCTGCGAGTATAAACGCCTTTGATATCATATGCCTGTCCTCTGGCTTTAACCTTAGTGGATTCTTTGAAGACAGTTTTCGGAGAAGGGAAGCGAGGTTTACTTCCAGACAGCCGGCACAGGTCATCATATCAAGGCTGGAAGAAATCGCGAAGCGGCTAAAGATGAAGATAAAGAAAAAGGCTGCTGGTTTGTTGAAACTAGAAGGAGTCCAAGAAGGTAGGAAGGGAAACCTGTCATTGGATGCTGAGATCTTTGAGATTACTCCCTTTTTCCATTTGGTGGAAGTGAAAAAATCCAATGGAGACACAATGGAATATCAAGAAATTATGGATAAGGATATAAGGCCTGCCCTTAAGGACATTGTTTGGGTTTGGCAAGGTGAAAACCAACAAGAGCAATCACAACAGTTGGCGCAACAGATACCGGAAAACAACCAGCAGTAA	1374	0.4389	MDSTTNTLMQRYELGRLLGQGTFGKVYYARSSITNQSVAIKVIDKDKVIRTGQCERIKREVTIMRLVRHPYIIQLLEIMATKSKIYFVMEYAKGGELFDLVAKGKLKEDDAHKYFRQLVKAVDFCHSRGVYHRDIKPENLLLDENEDLKVSDFGLSALAESKRKDGLLHTTCGTPSYVAPEVIRRKGYDGTKADIWSCGVVLFVLLAGYLPFHDSNLIEMYRKISKGEFTCPSWFPNNVRRLLCKMLDPDPENRATVAKIRESSWFRKGPNSRQKKLEVENKAITNPADQSHESDNVVAESNQEPVSAAAAASINAFDIICLSSGFNLSGFFEDSFRRREARFTSRQPAQVIISRLEEIAKRLKMKIKKKAAGLLKLEGVQEGRKGNLSLDAEIFEITPFFHLVEVKKSNGDTMEYQEIMDKDIRPALKDIVWVWQGENQQEQSQQLAQQIPENNQQ	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90632g00030	457	MobiDBLite	consensus disorder prediction	267	296	-	-
	Stsc90632g00030	457	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468
	Stsc90632g00030	457	ProSiteProfiles	NAF domain profile.	309	333	IPR018451	GO:0007165
	Stsc90632g00030	457	Gene3D	Kinase associated domain 1, KA1	309	434	-	-
	Stsc90632g00030	457	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	429	-	-
	Stsc90632g00030	457	SMART	serkin_6	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90632g00030	457	Pfam	NAF domain	312	369	IPR004041	GO:0007165
	Stsc90632g00030	457	ProSitePatterns	Protein kinases ATP-binding region signature.	18	41	IPR017441	GO:0005524
	Stsc90632g00030	457	SUPERFAMILY	Protein kinase-like (PK-like)	8	303	IPR011009	-
	Stsc90632g00030	457	Gene3D	Phosphorylase Kinase; domain 1	5	96	-	-
	Stsc90632g00030	457	CDD	CIPK_C	315	429	-	-
	Stsc90632g00030	457	Gene3D	Transferase(Phosphotransferase) domain 1	97	297	-	-
	Stsc90632g00030	457	FunFam	Non-specific serine/threonine protein kinase	5	305	-	-
	Stsc90632g00030	457	MobiDBLite	consensus disorder prediction	267	282	-	-
	Stsc90632g00030	457	Pfam	Protein kinase domain	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90632g00030	457	FunFam	Non-specific serine/threonine protein kinase	309	433	-	-
	Stsc90632g00030	457	ProSiteProfiles	Protein kinase domain profile.	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90632g00030	457	FunFam	Non-specific serine/threonine protein kinase	3	91	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90632g00030	Stsc-Chr90632	222619	224885	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90632g00030	1	444	CBL-interacting serine-threonine protein kinases	AT5G58380	64.795	0.0	624

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Stsc90632g00030		Pkinase	8.5e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90632g00030	-		K07198	gmx:100779316	651.358