Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90632g00028 ATGGAAGGTTTCCGACAGTTATGGTGTCAACCGCACCGCCCTCTTTCTCGGCTTCTTTTCCTCCGATCAATTTCTTCCAAGATTTTTGTCAAAGGGTTAGCATTTTCTACCACAAAAGAGAAACTAGCTGAGGCCTTTTCGGAATATGGCAATGTCCTAAATGCTTATGTAGTACTGAATAAAGCCAAGAATAGATCCAAGGGTTTCGGATATGTGACCTTTGCTAAGGAGGAAGAAGCCCGCAATGCACAAATGGCCATGAATGGACAGGCAAGGATCTAG 282 0.4397 MEGFRQLWCQPHRPLSRLLFLRSISSKIFVKGLAFSTTKEKLAEAFSEYGNVLNAYVVLNKAKNRSKGFGYVTFAKEEEARNAQMAMNGQARI 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90632g00028 93 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 93 IPR000504 GO:0003723
Stsc90632g00028 93 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 90 IPR000504 GO:0003723
Stsc90632g00028 93 SMART rrm1_1 27 92 IPR000504 GO:0003723
Stsc90632g00028 93 Gene3D - 16 92 IPR012677 -
Stsc90632g00028 93 SUPERFAMILY RNA-binding domain, RBD 26 90 IPR035979 GO:0003676
Stsc90632g00028 93 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 22 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90632g00028 Stsc-Chr90632 211131 213540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90632g00028 20 90 Eukaryotic Initiation Factors Gene Family AT1G22760 43.662 7.69e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90632g00028 - K13195 gmx:100527061 110.153