Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90631g00045 | ATGGAAGCTTTCGGTGGAATTTTGGTTGATGAGAAAGCCGTTAGGGTCGAGAACGCTTTCCTCGATTTCCTCAAGAGGTCCGGGAACCGGAACGAGCCCCACTACGACGCGGAGATAGAAGTGATGAGGGCTAACGAATCCAACACAATGTTCATCGACTTCGAACACGTCGTCACTTTCAGTGACGTTCTCCAGAAAGCTATCTCTGATGAATATTTGAGATTTGAGCCTTATTTGAAGAATGCTTGCAAGAGGTTCGTTATGGAACTGAAGCCTACCTTCATATCTGATGATAACCCTAACAAAGACATCAACATTGCCTTCTACAACCTTCCAATCGTTAAGCGATTGAGGGAACTTACCACATCAGAAATTGGTAAACTAGTATCCGTGACTGGGGTTGTAACCAGGACCAGTGAGGTTCGTCCTGAGCTTATTCAGGGGACATTCAAGTGCCTAGAGTGTGGTGGTATTATAAAGAATGTGGAACAAGAATTCAAGTATACAGAGCCCACGATCTGCCCGATTCCAACATGTAACAAACGACTAAGGTGGATGCTCATGCGCCAAGAGAGCAAATTTGCAGACTGGCAACGTGTCAGGATGCAAGAGACTTCCAAAGAGATACCTGCTGGGTCGCTCCCTAGGTCATTGGATGTTATTCTTCGTCACGAGATTGTGGAACAGGCCAGGGCCGGTGACACGGTGATTTTCACAGGGACTGTAGTTGTTATTCCTGACCTTTTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGCCGCCGTGAAGCTTCTCAACGCAGGGGTCCTGCAGCTGGAAATGAAGGTGTTAGGGGCCTCAGGGCTCTTGGAGTCAGAGACCTCTCTTATCGCCTAGCATTTATTGCCAACTCTGTTCAGATTTGCGATGGTAGAAGAGATGCTGACATCCGAAATAGAAAGAAGGATTCTGATGATGATGATATGCAGTTTACTACACAGGAGCTGGATGAAATACAACGAATGAGGAATATTCCAGATTTCTTCAAAAAACTTGTTAACAGCATCAACCTCAGAGGAGATATAAATGTTTGCATTGTTGGGGATCCCAGCTGTGCAAAGTCTCAATTTCTCAAGTATACTTCAGGCATAGTTCCAAGATCTGTTTATACGTCTGGGAAATCATCATCTGCCGCTGGCTTGACTGCAACAGTTGCTAAGGAACCAGAAACTGGGGAATTTTGTATTGAGGCTGGTGCTTTGATGCTTGCAGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATCAGGGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAAACAATTAGTATCACAAAAGCAGGGATTCAAGCAACACTTAATGCCCGTACTTCTATTCTTGCTGCTGCCAACCCTGCTGGGGGACGCTATGATAAGTCTAAACCACTTAAGTACAATGTGGCTCTTCCACCTGCCATACTCTCAAGGTTTGATCTTGTATATGTTATGATTGATGATCCAGACGATCAGACAGATTACCACATAGCTCATCATATTGTAAGAGTTCATCAAAAGCGTGAAGAAGCTCTAACTCCGACGTTCACCACTGCACAACTGAAGCGTTATATAGCTTATGCAAAAACTCTCAAACCAAAGCTTACGGCAGATGCCAGAAAAATACTAGTAGACTCTTATGTTGCTCTTCGGAGAGGTGATACAAATCCTGGGAGTAGGGTTGCATATCGAATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCTGAAGCCATTGCACGATGTCATTTGGAAACTCAGGTGCAACCTCAACATGTTAACTTAGCAGTAAAGCTGCTGAAAACATCAATAATAAGTGTGGAGTCTGGTGACATTGATCTATCTGAGTTTCAAGAAGAGAACCAGGGTGAAGATGGTGACAGAAATGATAATAATGGGGATAATGGGACTGATATTAAAAGAGAACCTGGAAATCAAGAGGGAACGCAGCAAGCTGCTGGAACAAATGAAAATGCAGCAGATGGATCTAACCCCCAGCCGAAGAAACTAATCATAAGTGATGAATACTTTCAGAGAGTGACCCGGGCACTCATCATGCATCTTAGACAGCATGAAGAAACTGTCCTGCAACAAGGAACTGGGTTGGCTGGAGTAAGGCAACGAGACTTGATTCAATGGTATGTAGACCAACAAAATGAGAAAAATGCTTACAGTTCTATGGAGGAGGTTAAAGCAGAACTTTCCAGACTCAAAGCTATTATCGAGAGTTTAATCCGAAGAGAGGGCTATTTGATAGTGCTGGATGATGGTATGCAGGAAGCAGCCGACGGTGCGGCTCCAGAGCACGTATCTAGAAATGATCGAATTTTAGCCGTGGCTCCTAATTATGTCATTGATTAA | 2412 | 0.4428 | MEAFGGILVDEKAVRVENAFLDFLKRSGNRNEPHYDAEIEVMRANESNTMFIDFEHVVTFSDVLQKAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNKDINIAFYNLPIVKRLRELTTSEIGKLVSVTGVVTRTSEVRPELIQGTFKCLECGGIIKNVEQEFKYTEPTICPIPTCNKRLRWMLMRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDLLALASPGERSECRREASQRRGPAAGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRRDADIRNRKKDSDDDDMQFTTQELDEIQRMRNIPDFFKKLVNSINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREEALTPTFTTAQLKRYIAYAKTLKPKLTADARKILVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLETQVQPQHVNLAVKLLKTSIISVESGDIDLSEFQEENQGEDGDRNDNNGDNGTDIKREPGNQEGTQQAAGTNENAADGSNPQPKKLIISDEYFQRVTRALIMHLRQHEETVLQQGTGLAGVRQRDLIQWYVDQQNEKNAYSSMEEVKAELSRLKAIIESLIRREGYLIVLDDGMQEAADGAAPEHVSRNDRILAVAPNYVID | 803 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90631g00045 | 803 | CDD | MCM6 | 343 | 620 | - | - | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 72 | 84 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 276 | 297 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 114 | 126 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 164 | 181 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 217 | 228 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Stsc90631g00045 | 803 | Gene3D | - | 8 | 113 | - | - | |
| Stsc90631g00045 | 803 | ProSiteProfiles | MCM family domain profile. | 343 | 517 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | FunFam | DNA helicase | 683 | 803 | - | - | |
| Stsc90631g00045 | 803 | ProSitePatterns | MCM family signature. | 420 | 428 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Stsc90631g00045 | 803 | Gene3D | - | 117 | 245 | IPR012340 | - | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 352 | 367 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 440 | 453 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 464 | 476 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 412 | 426 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 491 | 499 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | Pfam | MCM N-terminal domain | 18 | 110 | IPR027925 | - | |
| Stsc90631g00045 | 803 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 344 | 621 | IPR027417 | - | |
| Stsc90631g00045 | 803 | Gene3D | - | 683 | 803 | - | - | |
| Stsc90631g00045 | 803 | Pfam | MCM P-loop domain | 344 | 521 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 348 | 740 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | SUPERFAMILY | Nucleic acid-binding proteins | 22 | 247 | IPR012340 | - | |
| Stsc90631g00045 | 803 | Pfam | MCM OB domain | 117 | 245 | IPR033762 | - | |
| Stsc90631g00045 | 803 | Pfam | MCM6 C-terminal winged-helix domain | 685 | 802 | IPR041024 | - | |
| Stsc90631g00045 | 803 | Gene3D | - | 144 | 195 | - | - | |
| Stsc90631g00045 | 803 | MobiDBLite | consensus disorder prediction | 638 | 658 | - | - | |
| Stsc90631g00045 | 803 | Gene3D | - | 319 | 626 | IPR027417 | - | |
| Stsc90631g00045 | 803 | Pfam | MCM AAA-lid domain | 536 | 621 | IPR041562 | - | |
| Stsc90631g00045 | 803 | MobiDBLite | consensus disorder prediction | 659 | 680 | - | - | |
| Stsc90631g00045 | 803 | SMART | mcm | 113 | 622 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc90631g00045 | 803 | Coils | Coil | 744 | 764 | - | - | |
| Stsc90631g00045 | 803 | FunFam | Cell division control protein 21 | 333 | 626 | - | - | |
| Stsc90631g00045 | 803 | MobiDBLite | consensus disorder prediction | 634 | 687 | - | - | |
| Stsc90631g00045 | 803 | FunFam | DNA helicase | 144 | 195 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90631g00045 | Stsc-Chr90631 | 290103 | 295479 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90631g00045 | 1 | 803 | Core DNA Replication Machinery Family | AT5G44635 | 69.249 | 0.0 | 1205 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90631g00045 | K02542 | - | qsa:O6P43_013351 | 1286.94 |