Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90631g00035 ATGGCATCATCGCAAGTTGAAATTGCTTCGTCTTCGCCGTTTGGTTTGGTTCTGAGGGACCGTAACCACCGCGGCGATGGATGCAGAGAAAGCAATGTCGTTAACAAGGCCACACAAGCTGCTCTTCAGAGGAACATCAAGAACTTCGTCATGGACCACCTTAACATGTCCATGTCCATGTCCGACGAGAACAATTCTCCCCACTGGGTTTCCAACAATGACAACAACCACGACCATCAGCATCATCGCCGCCATCACCACCGACGCCACCACAATCTTCATCTCTCAAGTACCAGCCATGGCATTGACACGGATGAATCCTCATTGAGCTCTTTGATTAGCCCAAGACACACCCAGATTCTTGATCGCTGGGCCGCGAAACAAGCCCGGGAGATTGTTTCCAATTTAGAGAGTGAAGCTGGGTTGTTGTCAATGGATGATAACAACAAAGAGCTTGGCAATAAATGTATAGATATCTCGAACCTTGCTGCTTCTTCACTTGTTCAGATATGGGAGAAGAGGATCGGTGGATCGAAACCCGAAACAAATGCTGCTTCTAATGGCGCCAAAAATGATGCTGCTGCTTCTAATTGTGAGTCTGAAGCAGGGGAATCCTCCTGCGCCCTGGCGAACGAGGACTGGGAATCACATAGTGATGACCAGTCCTTTTCTTCGCCACAGTCGCGGTGGTCCTCCTGCGAGACTGCAACATCAGAGGACAGAGAAAGAGAGAGGGACAGAGAAAGAGACAGGGTTTCTGTTGCAGACATAATCAAGAGGCTAACCACAACAAGTGTCCATGGCGATGACAATGAATCTGAAGGGTTTGTTAGCAGCGTGGCAAGCTCTCCTTGCAGAGATTTGGCACCCGAGAATTTGGACAGGAGGGCTTTTGCCCTGATGATTGGTGCCCCCGGAAAGATTCGAGGGCGGCGGGTTTTCACCGATATGCTTATGCAGCTGGAGAGGGACCGCCGTGGGGAGCTTAACCACCTGGCAGAGCGCCGAGCCGTGTCGAGGTTCCCTCAGAAAGGTCGAATTCAGTCATTGCTTAGACTAAGATTGTTGCAACGGAATGCAGCTGCTGAGAATGATCATCTATCTCAACAGAAATCAACATTGTCTAGACAGAACAAACGGCCACAAGAATCTGCAATTGTTATGGAGAAACTAAGGGAAAAGTTTAACACACGGGTTGTTGAACACAGAAATGCTGACCAGGCAGAAGCAGCTCATCCAACGATGTCACGAACACAGACAGTTACCGATCCTGTACCGTCAGATAAGTCCGCCGCGGCTACTCAACCGAGCAAAGGCATTTGCAACCAGACTGTTGTTCGTGAGACTGCTAATAGCTCTAGAGAATCCACACAAGTAACAATCTCTGAGACTAATGCAGATCAAAATAAAGAGAAAGAACATTCAAGTTCACATGTCACACTGCAAGAAACATATGCGGATGCTCATAATGATGATTGCTATGAAACTCCTAGGGCAACGATATCGGTGGCTGATTCGGGCCATAATGAGATTGCAAACGAGGCAGAATCAAGTGAACAACAGCAGGCTGTGGATTTGGTAGAAACCAAATATGAAGATGCCATGGAAGTGGGAGATGCAAGAGACCAACACTTTGATGAAAGTAATTATGATGATATTTTTGATGAGGTAGAGGCCATGGATCAGAGTTATGATGCAACTAGTTATGACTGGATCAGCGAAATTTCTCGGCCAAGGAGCTACTGGGAAGAGCGTAGGCAAGCATGGTACAAAGAGATTCTTGACACTGCTTCTGAAAATGAGGATATACGTGTTCTCCTAGAAAGAAAAACAGTCTCGACTTTCCTTTCGAGCAGCTTCCGGCCGACAATGGATAGGTTGATGAACTCTCACAAGGGAACACAAACACAACTAGTCAATTGTCAAGATGATGAGGATGACAGCAGCCAAATTCTGATGGCGTATCTACAAGAACGCATGCGTTCTGCAAAAGCTCCTCAAGAAGATGAACAAGAGAGAGGTGAAGAGGAGGAAAAGCAAGACAAGAGGCAGAATGCGAGAGAAGAGCAGGAGCGGTGTCATGAAGACGTTGAGCATTTTCAACAATCCTCATCACCATGCCCTTCAAGAACATGGAGTTACAAAGACAATGAAACCTGTGATGATTCTGTATATGCATGTCCATCTGCATCTGCATACTCTCCTCCGCACTCGCAACCCTCTCATTGTCAATCATCGTATCAGAATAATACGCGAAGTTCTTCACCACCTAATCATCATTCAATTGAAATGGAACTCATCTATGATTTGAGAGGACAAATGCAGCAACTTCATCGTGAAATGTTTGAGCTAAGGAAAACGATAAAGAGCTGCATCGATATGCAGATGCAGATGCAGATGCAATTACAACAACAATCCATGGTCCAAACAGTTAACAAAGAAGAAAACAGAACAGACAAGAAGTCACCAAAGAAAGGCAACTGCTGTATATGCCATGAAGAGAAAGCTGACTCAATTTTATACAGGTGTGGGCACATGTGTGCATGTCTAAAGTGTGCCAATGAGCTGCAATGGAATGGTGGAAAGTGTCCAATTTGTCGAGCCAAAATATTAGATGTTGTTCGAGTATGCATTGATGCTTAG 2643 0.4593 MASSQVEIASSSPFGLVLRDRNHRGDGCRESNVVNKATQAALQRNIKNFVMDHLNMSMSMSDENNSPHWVSNNDNNHDHQHHRRHHHRRHHNLHLSSTSHGIDTDESSLSSLISPRHTQILDRWAAKQAREIVSNLESEAGLLSMDDNNKELGNKCIDISNLAASSLVQIWEKRIGGSKPETNAASNGAKNDAAASNCESEAGESSCALANEDWESHSDDQSFSSPQSRWSSCETATSEDRERERDRERDRVSVADIIKRLTTTSVHGDDNESEGFVSSVASSPCRDLAPENLDRRAFALMIGAPGKIRGRRVFTDMLMQLERDRRGELNHLAERRAVSRFPQKGRIQSLLRLRLLQRNAAAENDHLSQQKSTLSRQNKRPQESAIVMEKLREKFNTRVVEHRNADQAEAAHPTMSRTQTVTDPVPSDKSAAATQPSKGICNQTVVRETANSSRESTQVTISETNADQNKEKEHSSSHVTLQETYADAHNDDCYETPRATISVADSGHNEIANEAESSEQQQAVDLVETKYEDAMEVGDARDQHFDESNYDDIFDEVEAMDQSYDATSYDWISEISRPRSYWEERRQAWYKEILDTASENEDIRVLLERKTVSTFLSSSFRPTMDRLMNSHKGTQTQLVNCQDDEDDSSQILMAYLQERMRSAKAPQEDEQERGEEEEKQDKRQNAREEQERCHEDVEHFQQSSSPCPSRTWSYKDNETCDDSVYACPSASAYSPPHSQPSHCQSSYQNNTRSSSPPNHHSIEMELIYDLRGQMQQLHREMFELRKTIKSCIDMQMQMQMQLQQQSMVQTVNKEENRTDKKSPKKGNCCICHEEKADSILYRCGHMCACLKCANELQWNGGKCPICRAKILDVVRVCIDA 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 662 699 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 178 197 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 730 759 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 214 250 - -
Stsc90631g00035 880 Coils Coil 671 692 - -
Stsc90631g00035 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 799 879 IPR013083 -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 362 382 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 235 250 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 77 110 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 79 95 - -
Stsc90631g00035 880 SUPERFAMILY RING/U-box 827 872 - -
Stsc90631g00035 880 PANTHER BNAC05G24000D PROTEIN 1 879 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 732 759 - -
Stsc90631g00035 880 CDD mRING-HC-C3HC5_NEU1 825 876 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 404 479 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 660 712 - -
Stsc90631g00035 880 Pfam Zinc finger, C3HC4 type (RING finger) 825 872 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 220 234 - -
Stsc90631g00035 880 ProSiteProfiles Zinc finger RING-type profile. 828 867 IPR001841 -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 180 197 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 411 465 - -
Stsc90631g00035 880 MobiDBLite consensus disorder prediction 362 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90631g00035 Stsc-Chr90631 214130 217911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90631g00035 828 876 C3H Transcription Factor Family AT3G06140 40.816 6.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90631g00035 - - ahf:112741787 1232.62