Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90631g00034 ATGAACATAATTAACGTAAACCTTTCACTAATAACAATACTACTATTCTTCTTCCTTGGCTTTTCTCAGGATACTGAAACTGAAACTACTCTCAAGGTGCTTTTGGACGTTAAGTCCTCGTTTCTTGAAGACCCATTGAATGTTCTTGCAGATTGGAGACACAACAACACAAACTACTGTTCATGGACTGGAATCACATGCAGTGATCTTGATAATACCACCGTCCTGGGAATCAACCTCTCTGGATCCTCACTCACTGGATCAATATCACCATCACTTTCTCGTTTACAATCTCTTCTCAAACTTGACCTATCTTCTAACCGTCTTGTGGGTCCCATACCACACACTCTAACAAACCTCACTTCATTGGAGTATCTCCTTCTGCTCTCCAACCAACTTACGGGATACGTTCCCGACGAGCTAGGTTCTATGATCAATCTCCGAGTCCTCAAACTCGGTGATAACCAATTCACCGGCTCTATTCCTCCCTCCCTTGGGAGCCTTGTCAAACTCAACTTTCTTGGACTCGCCTGGAACAGACTCACCGGACCGATTCCAACTGAGCTGGGTCGACTCAGCGAGTTGCAGCAGCTGATGCTCCAGGGAAACAACTTGACCGGGACGGTTCCTGCCGAGTTGGGGAACTGCTCCAATCTCCAGAATCTTGACCTTTCACACAACATGCTGACGGGTGAGTTACCGAGTCAACTCGGTCAGCTGAGTGAACTCACTGACTTGGTCGTCAAGGAAAACCAGCTTGTGGGTAACATTCCAAAGTTTCTTTTTCAATTGGGTAAGCTTCAAAGTCTGGACTTGTCAACAAACAACTTCACTGGAGAGGTTCCACGTGAGTTTGAGAACTTGAGAGAGTTAAAGAGCTTGAGACTCTCTTGGAACCAATTTCATGGTAGTACTATTCCTAGTACTATATGTTCCAAAGCATCAAAGTTGGAGGCTTTATATATTTCAGATTGTGGGCTTCATGGTGTGATTCCAATTGAGTTAACTCAGTGTGTATCATTGAAGCTTCTTGATTTTTCCAATAACTCTCTCAGTGGTTCAATCTCTCCCTTCCTCATTGGGAACCTCACAAAACTGGAGGAAATTTATTTGTACAGAAACAACTTGAATGGTTCTTTGCCCAGAGAGATTGGGAAGCTTCGGAATTTGACAAGGTTGTCCCTTTATTTGAATCAGTTATCTGGGCAGATTCCTTTGGAGATTGGTAACTGTTTAAGGTTGCAGTTGATTGATCTTTCTATGAACCAACTCAGCGGTGGGATTCCAATCACTATTGGAAGGCTTAAAGAGTTGAATTTGCTTAAACTTTGGAATAATAACCTTGAGGGGAAGATTCCTGCCACACTTGGTAACTGTCACAAGATGAACATGATTGATCTGGCAAATAATCAGCTATCAGGTTCAATTCCTGCAACACTAGGGTTCTTGACAGGACTGGATCAGCTCTTAATATTCAACAATTCTCTTGAAGGTAACCTTCCTCACCAGCTTGCAAATGTAGCAAACTTGACATACTTGAACCTTTCAGGGAACAAGCTTAATGGTAGTTTAGCTCCATTGTGCAGCTCAAGTTCATTTCGTTCCTTTGATGTAACTGATAATGAATTTGATGGTGTGATTCCCTTTCAATTAGGAAACTCACATTCTCTTGGAAGGCTGAGATTAGGGAACAATAGATTTTCTGGTGAAATTCCAAGGACATTGGGGAAAATCACTGAACTGTCACTGTTAGACTTATCAGGAAACTCACTCTCTGGACCAATACCAGATGAGCTTTCCTTGTGCAACAAGCTATCCTACATTGATCTGAACAACAATACTCTGTCCGGACCGATACCGCGGTGGATCGGAAGCTTGCCGGAGCTGGGAAAGCTTAGGCTCTCATTCAATCAATTCTCTGGGTCTCTTCCATTAGGCCTATTCAATTGTACAAAATTGCTAGCACTCTACCTTGATGGAAATTCCCTCAATGGAATTCTCCCAGAGAATGTTGGTAATCTTACATCATTGAATGTCCTTAGGCTTGGCCAAAACAATTTCTCTGGATCAATTCCTCATACAGTTGGTAGGCTGATCAATCTCTATGAACTGCAGCTTTCAAGAAATAGATTCAGTGATGAGATTCCATTTGAGATTGGGAATCTCCAAAATCTTCAGAACATTTTGGACCTCAGTTACAACAACCTCTCTGGAGAGATCCCAAGTTCAATTGGGTCATTGTTGAAATTGCAAGCTCTTAATCTTTCCCACAATCAACTCAGTGGTGAAGTCCCTCTGCTGTTTGGTGAAATGTCAAGCTTGGACCAACTTGATCTCTCTTACAATGATTTACAAGGCCAGCTGGATAAGCGATTATCCCGCTGGCCGTGTCAAGCTTTTGCCGGAAACATTCGCCTTTGTGGGACTTCTCTTAAGCCCTGCAAAGGCCATGCTTCCGACAAGAAGCTATCAAGGATATCAGTACTTACATTCACTGCAGTTTCAACTGCAGTTGCAATTGCACTAATCTTTGCAGTTAGAGTTTTCTTTAAAAAGAGGCCAGAATTTTTCAGCAAGGTTGGTGAAGTGAATTGCCTTTACTCCTCTTCTTCACATGCAAGGAAGGGATTTCTTTTTCCACTCAACATTGGTGGGAAGAGACAATTCAGGTGGGAAGACATCATGGATGCCACAAACAATCTTAGTGACGAGTTCATCATTGGTTCCGGCGGTTCCGGGACGGTGTACCGGGCCGAATTGGCCACCGGAGAGACAGTAGCTGTGAAGAAGATTTCATTCAAAGATGAATATCTCTTAAACAAGAGCTTTATAAGAGAAATGAAGACTCTGGGGAGGATAAGGCATAGACATCTGGTGAAACTGATTGGTTGTTGGAGCAACGGAAGAAAGACAGGATCATCAGGTTGGAATCTGCTGATATATGAGTACATGAAGAATGGGAGCGTGTGGGATTGGCTTCATGGAAGAACAATGAAGGGAAAAGGGGTTCTTGATTGGGATGCAAGGTTTAGAATTGCTGTGGGATTGGCTCATGGATTGGAGTACCTTCATCATGATTGTGTGCCAAAGATTATTCATAGGGACATCAAAACCAGTAACATATTGCTTGATTCTAACATGGATGCACATTTGGGAGATTTTGGACTTGCAAAAGCACTCCATGACAATTGTGAGTCCAACACTGAGTCCAATTCCTGTTTTGCTGGCTCTTATGGTTACATAGCCCCAGAGTATGCATACACAATGAAGGCAACAGAGAAGAGTGATGTATACAGCATGGGGATTGTGTTTATGGAACTTGTGAGTGGCAAAATGCCAACAGATGAAGCTTTCAGTGGAAACATGGGCATGGTGAGATGGGTGGAGATGCACTTCAACAACCAAGACGCCATGCGTGAGGAGCTGATTGATCCTGAGCTGAAGCCGCCTTTAACCGCGGAGGAGTTTGCGGCGTTCCAAGTGGTGGAGATAGCCATGCAGTGCACGAAAACTGCACCACAGGAGAGGCCATCTTCAAGGCAAGTTTGTGATCTTCTTCGCCATGTTGCCAACAACAGAAAGGTCAACTTTGAGAAGAGCAACATTGAGAGTCAACACAAGTGA 3624 0.4338 MNIINVNLSLITILLFFFLGFSQDTETETTLKVLLDVKSSFLEDPLNVLADWRHNNTNYCSWTGITCSDLDNTTVLGINLSGSSLTGSISPSLSRLQSLLKLDLSSNRLVGPIPHTLTNLTSLEYLLLLSNQLTGYVPDELGSMINLRVLKLGDNQFTGSIPPSLGSLVKLNFLGLAWNRLTGPIPTELGRLSELQQLMLQGNNLTGTVPAELGNCSNLQNLDLSHNMLTGELPSQLGQLSELTDLVVKENQLVGNIPKFLFQLGKLQSLDLSTNNFTGEVPREFENLRELKSLRLSWNQFHGSTIPSTICSKASKLEALYISDCGLHGVIPIELTQCVSLKLLDFSNNSLSGSISPFLIGNLTKLEEIYLYRNNLNGSLPREIGKLRNLTRLSLYLNQLSGQIPLEIGNCLRLQLIDLSMNQLSGGIPITIGRLKELNLLKLWNNNLEGKIPATLGNCHKMNMIDLANNQLSGSIPATLGFLTGLDQLLIFNNSLEGNLPHQLANVANLTYLNLSGNKLNGSLAPLCSSSSFRSFDVTDNEFDGVIPFQLGNSHSLGRLRLGNNRFSGEIPRTLGKITELSLLDLSGNSLSGPIPDELSLCNKLSYIDLNNNTLSGPIPRWIGSLPELGKLRLSFNQFSGSLPLGLFNCTKLLALYLDGNSLNGILPENVGNLTSLNVLRLGQNNFSGSIPHTVGRLINLYELQLSRNRFSDEIPFEIGNLQNLQNILDLSYNNLSGEIPSSIGSLLKLQALNLSHNQLSGEVPLLFGEMSSLDQLDLSYNDLQGQLDKRLSRWPCQAFAGNIRLCGTSLKPCKGHASDKKLSRISVLTFTAVSTAVAIALIFAVRVFFKKRPEFFSKVGEVNCLYSSSSHARKGFLFPLNIGGKRQFRWEDIMDATNNLSDEFIIGSGGSGTVYRAELATGETVAVKKISFKDEYLLNKSFIREMKTLGRIRHRHLVKLIGCWSNGRKTGSSGWNLLIYEYMKNGSVWDWLHGRTMKGKGVLDWDARFRIAVGLAHGLEYLHHDCVPKIIHRDIKTSNILLDSNMDAHLGDFGLAKALHDNCESNTESNSCFAGSYGYIAPEYAYTMKATEKSDVYSMGIVFMELVSGKMPTDEAFSGNMGMVRWVEMHFNNQDAMREELIDPELKPPLTAEEFAAFQVVEIAMQCTKTAPQERPSSRQVCDLLRHVANNRKVNFEKSNIESQHK 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90631g00034 1207 Pfam Leucine rich repeat 242 301 IPR001611 GO:0005515
Stsc90631g00034 1207 FunFam Piriformospora indica-insensitive protein 2 188 282 - -
Stsc90631g00034 1207 Gene3D Ribonuclease Inhibitor 482 818 IPR032675 -
Stsc90631g00034 1207 Gene3D Ribonuclease Inhibitor 356 410 IPR032675 -
Stsc90631g00034 1207 Gene3D Ribonuclease Inhibitor 185 242 IPR032675 -
Stsc90631g00034 1207 Gene3D Ribonuclease Inhibitor 411 481 IPR032675 -
Stsc90631g00034 1207 SMART LRR_typ_2 264 287 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 435 459 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 288 313 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 363 386 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 747 770 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 578 602 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 674 698 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 626 650 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 217 240 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 507 531 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 120 143 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 96 119 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 387 411 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 192 216 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 144 168 IPR003591 -
Stsc90631g00034 1207 SMART LRR_typ_2 771 795 IPR003591 -
Stsc90631g00034 1207 ProSitePatterns Protein kinases ATP-binding region signature. 907 930 IPR017441 GO:0005524
Stsc90631g00034 1207 ProSiteProfiles Protein kinase domain profile. 901 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90631g00034 1207 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 283 380 - -
Stsc90631g00034 1207 ProSiteProfiles Leucine-rich repeat profile. 509 531 IPR001611 GO:0005515
Stsc90631g00034 1207 SUPERFAMILY L domain-like 526 811 - -
Stsc90631g00034 1207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1031 1043 IPR008271 GO:0004672|GO:0006468
Stsc90631g00034 1207 Gene3D Ribonuclease Inhibitor 248 355 IPR032675 -
Stsc90631g00034 1207 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 863 983 - -
Stsc90631g00034 1207 SMART serkin_6 901 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90631g00034 1207 SUPERFAMILY L domain-like 30 308 - -
Stsc90631g00034 1207 ProSiteProfiles Leucine-rich repeat profile. 218 240 IPR001611 GO:0005515
Stsc90631g00034 1207 FunFam Leucine-rich repeat receptor-like protein kinase 984 1203 - -
Stsc90631g00034 1207 SUPERFAMILY Protein kinase-like (PK-like) 880 1186 IPR011009 -
Stsc90631g00034 1207 PRINTS Leucine-rich repeat signature 747 760 - -
Stsc90631g00034 1207 PRINTS Leucine-rich repeat signature 219 232 - -
Stsc90631g00034 1207 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 438 1185 - -
Stsc90631g00034 1207 Pfam Protein kinase domain 906 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90631g00034 1207 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Stsc90631g00034 1207 SUPERFAMILY L domain-like 313 572 - -
Stsc90631g00034 1207 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 429 521 - -
Stsc90631g00034 1207 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 522 818 - -
Stsc90631g00034 1207 Gene3D Phosphorylase Kinase; domain 1 869 983 - -
Stsc90631g00034 1207 Gene3D Ribonuclease Inhibitor 27 184 IPR032675 -
Stsc90631g00034 1207 Gene3D Transferase(Phosphotransferase) domain 1 984 1206 - -
Stsc90631g00034 1207 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90631g00034 Stsc-Chr90631 207368 212172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90631g00034 5 649 Receptor kinase-like Gene Family AT1G17750 35.745 5.96e-102 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90631g00034 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90631g00034 - - gmx:100797153 1425.99