Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90631g00028 ATGCCAATTGATAAACAAAGAAGAGAGCAGTTGAATGACAAATTCCAACTCTTGAGAAGTTTGATCCCAAGCCCCACTAAGGTAGATAGAGCATCTGTAGTGGGAGATGCAATTGATTACATAAGAGAACTGATTAGAACTGTCAATGAACTCAAGTCATTGGTGGAGAAGAAAAGGATTGGGAGGGAGAGGTTCAAGAGGCACAAAGATGAAAATGATGGGTCCATAAGACCTTATGGTGATGGGTCCATAAGAACCTCATGGCTTCAGAGGAAATCGAAAGACAGTGAGGTTGATGTCCGGATAATCGATGATGAAGTTATAATCAAGATGGTTCAGAGGAAGAAGATCAACTGCATGCTTTTTGTCCCCAAGGTCCTGGATGAACTTCAGTTGGATCTTCAGCATGTTGCTGGTGGCCATGTTGGAGAGTATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCTTCAGTCTATGCAAGTGCCATTGCCAACAGGGTGATTGAGGTTATGGACAGTCAGTATGCAGCAGCATCTGTTCCACACAATAGCAGCTATTAA 567 0.4215 MPIDKQRREQLNDKFQLLRSLIPSPTKVDRASVVGDAIDYIRELIRTVNELKSLVEKKRIGRERFKRHKDENDGSIRPYGDGSIRTSWLQRKSKDSEVDVRIIDDEVIIKMVQRKKINCMLFVPKVLDELQLDLQHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIEVMDSQYAAASVPHNSSY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90631g00028 188 CDD bHLH_AtMYC1_like 2 64 IPR045896 -
Stsc90631g00028 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 61 IPR036638 GO:0046983
Stsc90631g00028 188 Gene3D - 2 70 IPR036638 GO:0046983
Stsc90631g00028 188 PANTHER TRANSCRIPTION FACTOR BHLH91 4 180 IPR045895 GO:0006355|GO:0048658
Stsc90631g00028 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 44 IPR011598 GO:0046983
Stsc90631g00028 188 SMART finulus 1 50 IPR011598 GO:0046983
Stsc90631g00028 188 Pfam Helix-loop-helix DNA-binding domain 3 44 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90631g00028 Stsc-Chr90631 161276 163005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90631g00028 2 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 53.365 2.22e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90631g00028 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90631g00028 - - gmx:100801349 279.641