Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90631g00027 ATGTTAACCATAAGCAAGAAACCTCCGTGGATGTTTTTCCCGGATATAATTCCTATAGGTCATCCAATATTTGATATTATCAACTCCACAAATCCGGAGACAGATTGGGACTTAAGGTTAGCTTGCCTCCTCCTATATGCATTTGATTGCGAAGACAACTTTTGGCAGTTGTATGGCGACTTCTTACCGAGTGCAGATGAGTGCACCAGCTTACTTCTAGCTTCAGAGGATGAACTTTCGGAGCTGCAAGATCCCGATCTTGCTTCTACTATGAGAAACCAGCACCAGCGAGCACTAGAGTTCTGGGAAAAGAACTGGCACAATTCTGCACCCCTTAAAATAAAGCGTCTTGCTCGCGATCCTCGAAGGTTCATGTGGGCAGTGGGTATTGCACAGTCACGGTGTATTAACATGCAAACGAGAATCGGTGCATTAACTCAAGATGCGAATATGATAATTCCTTATGCTGACATGCTGAACCATTCCTTTGAACCGAATTGTTCTTTGCATTGGCGTTTTAAGGACAGGATGCTTGAAGTTCTTATAAATGCTGGAGAGAAAATTAAAAGAGGAGATGAGATGACAATTAATTACATGAGCGGACAGAAGAATGAGATGCTAATGCAAAGATATGGATTTTCATCACCCGTGAATCCTTGGGATGTGATCAAATTCTCAGGCAATGCACAGATTCATCTGGATTCCTTTTTGTCCGTATTCAATATATCCGGCCTTCCCGAAGAGTATTACCATAACAATTGTCTAGCTAACGATGGCGACACTTTCGTTGATGGAGCTGTTGTAGCCGCAGCACGAACATTGCCAACTTGGTCGGACAAGGATGTGCCTCCAATCCCTAGTTCAGAAAGAATGGCGGTAAAGGAGTTACAACAAGAATGTCGACAGATGCTTGCTCAATACGCTACAACCTCTAAGCAAGACGAGAAATTGCTAGATTCCATGCCGAACGCTCCAAGGACACTTGAAGCTGCAATCAAGTATAGATTGCACCGGAAATTGTTCATTGAGAAGGCTATCCAAGCATTGGAGATCTATCAAGATAGAATACTATTCTGA 1077 0.429 MLTISKKPPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLYAFDCEDNFWQLYGDFLPSADECTSLLLASEDELSELQDPDLASTMRNQHQRALEFWEKNWHNSAPLKIKRLARDPRRFMWAVGIAQSRCINMQTRIGALTQDANMIIPYADMLNHSFEPNCSLHWRFKDRMLEVLINAGEKIKRGDEMTINYMSGQKNEMLMQRYGFSSPVNPWDVIKFSGNAQIHLDSFLSVFNISGLPEEYYHNNCLANDGDTFVDGAVVAAARTLPTWSDKDVPPIPSSERMAVKELQQECRQMLAQYATTSKQDEKLLDSMPNAPRTLEAAIKYRLHRKLFIEKAIQALEIYQDRILF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90631g00027 358 Gene3D - 235 355 IPR036464 -
Stsc90631g00027 358 FunFam Plastid transcriptionally active 14 235 355 - -
Stsc90631g00027 358 CDD SET_LSMT 24 213 - -
Stsc90631g00027 358 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 210 350 IPR036464 -
Stsc90631g00027 358 Pfam Rubisco LSMT substrate-binding 287 339 IPR015353 -
Stsc90631g00027 358 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 16 328 - -
Stsc90631g00027 358 Coils Coil 293 313 - -
Stsc90631g00027 358 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 1 213 - -
Stsc90631g00027 358 Pfam SET domain 44 198 IPR001214 GO:0005515
Stsc90631g00027 358 Gene3D set domain protein methyltransferase, domain 1 14 213 - -
Stsc90631g00027 358 SUPERFAMILY SET domain 27 214 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90631g00027 Stsc-Chr90631 155720 158949 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc90631g00027 SET 3.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90631g00027 - - gmx:100790985 627.476