Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90631g00017 ATGGCTAAACTTGAGTCTCATCACACTACTACTCCACCAGCAATAAGCCCTACCATAAGCAAACCATGTTACCCTCCACAACCTCCCAACAACAATAACAATTCAAGCAGCTTCAACTTAATGGTTATTTTGGCAGCAATTGTATGCGCTTTCCTTTGCGCGCTAGGCCTTAACACCATGCTACTATGCGTCCTACAATGCGCGAGCCGCGTCCTTATGGAGCCCTTACAATGGATTGCTTCTAGAAGGATCAACTCAGGGCTCAAGAAGAAGGAAATGGTGGCTTTGCCAACCTCAGTTTATGATAGTAATAGCCATAATAGTAGTAGTAGTAGTGGTGGTGATTCAGGGTCATCACCATCTTCAGATTCTTCTAATTGTGCAATTTGCCTAAATGATTTCTCTGATGGAGAGAAGATAAGGTTTCTTCCAAAGTGTAATCATGGTTTTCATGTGGCTTGCATTGATAAGTGGCTTCTTTCACATTCTTCTTGCCCAACATGTAGGAACTTCCTCAAGTCCAATGCTTCAGCACCACACCCTTTTCATATTCTCATAGCTTAG 564 0.4273 MAKLESHHTTTPPAISPTISKPCYPPQPPNNNNNSSSFNLMVILAAIVCAFLCALGLNTMLLCVLQCASRVLMEPLQWIASRRINSGLKKKEMVALPTSVYDSNSHNSSSSSGGDSGSSPSSDSSNCAICLNDFSDGEKIRFLPKCNHGFHVACIDKWLLSHSSCPTCRNFLKSNASAPHPFHILIA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90631g00017 187 MobiDBLite consensus disorder prediction 100 124 - -
Stsc90631g00017 187 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Stsc90631g00017 187 SUPERFAMILY RING/U-box 126 175 - -
Stsc90631g00017 187 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 172 - -
Stsc90631g00017 187 CDD RING-H2_EL5-like 127 169 - -
Stsc90631g00017 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 174 IPR013083 -
Stsc90631g00017 187 SMART ring_2 127 168 IPR001841 -
Stsc90631g00017 187 MobiDBLite consensus disorder prediction 1 30 - -
Stsc90631g00017 187 Pfam Ring finger domain 126 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90631g00017 Stsc-Chr90631 94219 94917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90631g00017 25 172 C3H Transcription Factor Family AT2G17450 40.127 6.47e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90631g00017 - - gmx:100803003 207.994