Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90631g00003 ATGGCGCCGAGTGGAAGCAGAGATGTGCAGCTCACTTCGATCGCCGGCGGCAGAGACGATGACGCCGACGACTTGGAGGAGGTGCGGCTACTGGACTCTTACGATTCGCGAGACGGAATGGATGACGGCGGAATGAAGCGGATTCAGGTGAGGGTCACCGGGATGACCTGCGCTGCATGCTCCTCTTCCGTTGAATCCGCTCTGTGCGCCGTCGACGGCATAGTTGCTGCCTCCGTTGCACTGCTTCAGAACAAAGCCGATGTAGCTTTCAACCCAGCTCTGGTCAAGGCTTGGAAAAGGAAAACACTATCCAATTCTACTGAGTGTAAAATATTACCGGAAGCCAGCACAACTGGGAAGCCGCCACATGGAACACTTGTGGGACAATTCACAATTGGTGGTATGACATGCGCGGCCTGTGTAAATTCTGTGGAAGGTATTTTGAGAGATCTTCCAGGGGTTAAGAGGGCTGTGGTGGCTTTAGCTACTTCGTTAGGGGAAGTTGAATATGATCCGAGTGTAATTGGTAAAGATGATATAGTCAATGCTATTGAAGATGCTGGTTTCGAAGGTTCATTTGTACAGAGCAGTGAACAGGATAAAGTAGTTTTCGAGGTTGTTGGTGTGCATAATCTGATTGACACTCAAGTTTTAGAAGGCATGCTTGGCAGCATCAAAGGAGTAAGGCAATTTCGTTTTGATCAGATATCAGGTCAATTGGATGTTGTCTTTGATCCTGAAGTTCTCAGTCCTAGATACTTAGTTGATGGGATTGAAGGGGGAAGCAATGGAAAATTTCAATTACGTGTTAGGAACCCTTATACAAGGATGGCTTCTAAAGATGTTGAGGAAAGCTCAACTATGTTTCGGCTCTTCATGTCCAGCCTGCTTCTTAGTGTTCCTCTCTTCTTCATGAAGCTAGTATGTCCTCATATTCCCATGATATATTCTTTATTACTCCGTAGATGCGGGCCTTTCCTTACGGTTGATTGGTTGAAGTGGGGATTGGTGAGTATCATTCAATTTGTGATTGGGAAGCGGTTCTACATTGCTGCTGCCAGAGCTCTTAGAAACGGTTCTACAAACATGGATGTTCTAGTTGCTGTAGGAACTACCGCATCTTATTTTTATTCTGTTTGTGCTCTTCTATATGGAGCTCTTACCGGATTTAGGGCTCCAGTATACTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGAAAGTATTTGGAATGCCTTGCCAAGGGGAAGACATCAGACGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACAGCTTTACTGATTATCAAAGATAAAGGTGGTAGATCTATTGAAGAAAAGGAAATTGATTCTTTGCTCGTTCAACCTGGTGACTTGCTAAAAGTTGTTCCTGGTACAAAGATTCCTGCTGATGGAATCGTTACTTGGGGATCAAGTTATGTAAATGAAAGCATGGTAACAGGTGAAGCTGTACCTGTTCAGAAGGAGGTGAATGCATCTGTTATTGGTGGTACAATAAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTAGTTGAGACAGCACAGATGTCCAAAGCTCCAATTCAGAAATTTGCTGATTATGTAGCAAGTATATTTGTTCCTACAGTTGTTTCTTTGGCATTATTGACATTTTTTTCTTGGTATGTTGCTGGGTCTATTGGAGCTTATCCTGAGGAATGGCTGCCAGAAAATGGAAATCACTTCGTTTTTGCTCTAATGTTTTCAATAGCTGTTGTAGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCGACAGGGGTTGGGGCTAACAATGGAGTGCTAATTAAAGGAGGAGATGCCTTGGAAAGAGCTCAGATGGTGAAGTATGTGATATTTGATAAAACAGGAACTCTAACACAGGGAAAAGCTAGTGTTACTACTGCCAAGGCATTCACAGGAATGCAGCGTGGAGAATTTCTCAGATTGGTAGCTTCTGCTGAGGCTAGCAGTGAACACCCACTAGCACAAGCAATAGTAGAATATGCACGTCATTTTCATTTCTTTGATGACTCCTCTGCTTCTAATGCTACCGACAATAATGCCAAGGAGTTGAAGTCTGGGTGGCTTTTTGATGTCTCAGATTTCATTGCTCTTCCTGGAAGAGGTGTTCAATGCCTTATAGATGGGAAGCCTATTCTGGTTGGTAATAGGAAGCTCATGACGGAAAGTGGCATAGATATCTCAGATGAAGTGGAAAATTTTGTGGTGGAGCTAGAAGAAAGTGCAAAGACAGGGGTACTAGTTGCATATGATAATATAGTAATTGGAGTCATAGGGATTTCAGATCCACTAAAGAGAGAAGCATCTGTAGTTATAGAAGGGCTCCAGAAAATGGGTGTCAGACCTGTTATGGTTACAGGAGATAACTGGAGAACGGCTCGCGCTGTTGCCAAGGAGGTTGGCATCCAAGATGTTAGGGCAGAGGTTATGCCTGCTGGAAAAGCCGATGTTGTTCAATCATTCCAAAAAGATGGAACAATAGTTGCAATGGTTGGTGATGGTATCAATGACTCTCCTGCATTAGCTGCTGCTGATGTTGGTATGGCAATAGGGGCTGGAACAGATATTGCAATAGAAGCTGCTGACTATGTGTTGATGAGAAACAACTTGGAAGATGTAATCACCGCCATCGATCTTTCCCGAAAGACCTTCTCCCGTATTCGGCTGAATTATGTATTTGCAATGGTGTATAATGTTGTGGCTATACCAGTTGCTGCTGGGGCTTTGTATCCTTCACTAAGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTGTCTTCTGTAAGTGTTGTGTGTTCTTCTTTGCTTCTCAGAAGATATAGAAGACCAAGACTTACTCAAATACTTGAAATAGTTGTAGAGTAA 2988 0.4367 MAPSGSRDVQLTSIAGGRDDDADDLEEVRLLDSYDSRDGMDDGGMKRIQVRVTGMTCAACSSSVESALCAVDGIVAASVALLQNKADVAFNPALVKAWKRKTLSNSTECKILPEASTTGKPPHGTLVGQFTIGGMTCAACVNSVEGILRDLPGVKRAVVALATSLGEVEYDPSVIGKDDIVNAIEDAGFEGSFVQSSEQDKVVFEVVGVHNLIDTQVLEGMLGSIKGVRQFRFDQISGQLDVVFDPEVLSPRYLVDGIEGGSNGKFQLRVRNPYTRMASKDVEESSTMFRLFMSSLLLSVPLFFMKLVCPHIPMIYSLLLRRCGPFLTVDWLKWGLVSIIQFVIGKRFYIAAARALRNGSTNMDVLVAVGTTASYFYSVCALLYGALTGFRAPVYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLIIKDKGGRSIEEKEIDSLLVQPGDLLKVVPGTKIPADGIVTWGSSYVNESMVTGEAVPVQKEVNASVIGGTINLHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTFFSWYVAGSIGAYPEEWLPENGNHFVFALMFSIAVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASVTTAKAFTGMQRGEFLRLVASAEASSEHPLAQAIVEYARHFHFFDDSSASNATDNNAKELKSGWLFDVSDFIALPGRGVQCLIDGKPILVGNRKLMTESGIDISDEVENFVVELEESAKTGVLVAYDNIVIGVIGISDPLKREASVVIEGLQKMGVRPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVQSFQKDGTIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMVYNVVAIPVAAGALYPSLRIKLPPWVAGACMALSSVSVVCSSLLLRRYRRPRLTQILEIVVE 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90631g00003 995 SFLD C1.7: P-type atpase like 631 921 - -
Stsc90631g00003 995 MobiDBLite consensus disorder prediction 1 20 - -
Stsc90631g00003 995 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Stsc90631g00003 995 Pfam Heavy-metal-associated domain 50 94 IPR006121 GO:0046872
Stsc90631g00003 995 ProSiteProfiles Heavy-metal-associated domain profile. 46 123 IPR006121 GO:0046872
Stsc90631g00003 995 ProSitePatterns Heavy-metal-associated domain. 52 82 IPR017969 GO:0046872
Stsc90631g00003 995 NCBIfam HAD-IC family P-type ATPase 402 701 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90631g00003 995 NCBIfam HAD-IC family P-type ATPase 750 948 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90631g00003 995 PRINTS Copper-transporting ATPase 1 signature 73 96 - -
Stsc90631g00003 995 PRINTS Copper-transporting ATPase 1 signature 150 171 - -
Stsc90631g00003 995 PRINTS Copper-transporting ATPase 1 signature 47 72 - -
Stsc90631g00003 995 Gene3D - 640 919 IPR023214 -
Stsc90631g00003 995 FunFam Copper-exporting P-type ATPase 749 800 - -
Stsc90631g00003 995 Gene3D - 45 109 - -
Stsc90631g00003 995 Gene3D - 417 539 - -
Stsc90631g00003 995 FunFam Copper-transporting ATPase RAN1 656 748 - -
Stsc90631g00003 995 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Stsc90631g00003 995 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Stsc90631g00003 995 SUPERFAMILY Calcium ATPase, transmembrane domain M 386 957 IPR023298 -
Stsc90631g00003 995 SUPERFAMILY HMA, heavy metal-associated domain 125 196 IPR036163 GO:0046872
Stsc90631g00003 995 CDD HMA 49 93 IPR006121 GO:0046872
Stsc90631g00003 995 ProSitePatterns E1-E2 ATPases phosphorylation site. 651 657 IPR018303 -
Stsc90631g00003 995 CDD P-type_ATPase_Cu-like 290 965 - -
Stsc90631g00003 995 Pfam haloacid dehalogenase-like hydrolase 645 883 - -
Stsc90631g00003 995 Pfam E1-E2 ATPase 430 628 - -
Stsc90631g00003 995 Gene3D - 660 802 IPR023299 GO:0000166
Stsc90631g00003 995 FunFam Copper-exporting P-type ATPase A 125 194 - -
Stsc90631g00003 995 NCBIfam heavy metal translocating P-type ATPase 363 978 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc90631g00003 995 SFLD p-type atpase 631 921 IPR044492 -
Stsc90631g00003 995 FunFam Copper-transporting ATPase 1, putative 417 539 - -
Stsc90631g00003 995 CDD HMA 129 190 IPR006121 GO:0046872
Stsc90631g00003 995 PRINTS P-type cation-transporting ATPase superfamily signature 869 888 - -
Stsc90631g00003 995 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Stsc90631g00003 995 PRINTS P-type cation-transporting ATPase superfamily signature 816 826 - -
Stsc90631g00003 995 PRINTS P-type cation-transporting ATPase superfamily signature 892 904 - -
Stsc90631g00003 995 PRINTS P-type cation-transporting ATPase superfamily signature 649 663 - -
Stsc90631g00003 995 PRINTS P-type cation-transporting ATPase superfamily signature 794 805 - -
Stsc90631g00003 995 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 22 990 - -
Stsc90631g00003 995 SUPERFAMILY HMA, heavy metal-associated domain 43 96 IPR036163 GO:0046872
Stsc90631g00003 995 SUPERFAMILY HAD-like 648 975 IPR036412 -
Stsc90631g00003 995 SUPERFAMILY Calcium ATPase, transduction domain A 449 535 IPR008250 -
Stsc90631g00003 995 FunFam Probable copper-transporting ATPase HMA5 772 926 - -
Stsc90631g00003 995 Gene3D - 128 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90631g00003 Stsc-Chr90631 10950 17312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90631g00003 1 995 Primary Pumps ATPases AT5G44790 72.745 0.0 1472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90631g00003 K17686 - gmx:100804960 1580.84