Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00054 ATGGCGACTCGAGAGGTTAAAAAACCTCGTTCACTCCCTTCATACCCCGAGATGATATTGAAGGCAATTGAAGCTCTTAACGAAGAGAACGGTTCAAACAAAACGACAATATCAAAGTACATAGAATCCACGTACGGAGGTTTGCCCCAGGGGCACAAGGCACTTCTCAATGTGCACCTTGCAAAGATGAGGGACAGTGGTGAGCTAGTCTTTTGGAAAAACAACTACACTATTCGTGACCCCGACGCCCCACCGCGTCGGGGCCGTGGTAGGCCGCCAAAGACCAAGGACACCCCTTCCCTGGGTGTCATGAGTGCGCCCTCCAGGCCCCGGGGACGGCCCCCAAAGGACCCAAATGAGCCGCCACGTACGCCCAAGGCTAAGACCTCAGGCGGGAGTGGCAGGCCGAGAGGGCGGCCAAGGAAAATGGCCCGGCCCTCGGGGGGATTTGATAGCCCTCCACCATCAACGGTGGTGGGAGGCTCGCCCAGTGGGAGGGGTAGAGGTAGGCCTCCCAAAATGAAGGGTCCATTGGCGGGTATTAGTGTTGAGCAATAG 558 0.5681 MATREVKKPRSLPSYPEMILKAIEALNEENGSNKTTISKYIESTYGGLPQGHKALLNVHLAKMRDSGELVFWKNNYTIRDPDAPPRRGRGRPPKTKDTPSLGVMSAPSRPRGRPPKDPNEPPRTPKAKTSGGSGRPRGRPRKMARPSGGFDSPPPSTVVGGSPSGRGRGRPPKMKGPLAGISVEQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00054 185 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Stsc90630g00054 185 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Stsc90630g00054 185 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Stsc90630g00054 185 FunFam HMG-Y-related protein A 7 89 - -
Stsc90630g00054 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc90630g00054 185 PANTHER HISTONE H1 7 175 - -
Stsc90630g00054 185 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc90630g00054 185 Pfam AT hook motif 109 119 IPR017956 GO:0003677
Stsc90630g00054 185 Pfam AT hook motif 134 144 IPR017956 GO:0003677
Stsc90630g00054 185 Pfam AT hook motif 165 176 IPR017956 GO:0003677
Stsc90630g00054 185 Pfam AT hook motif 87 97 IPR017956 GO:0003677
Stsc90630g00054 185 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Stsc90630g00054 185 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Stsc90630g00054 185 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Stsc90630g00054 185 SUPERFAMILY "Winged helix" DNA-binding domain 7 85 IPR036390 -
Stsc90630g00054 185 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Stsc90630g00054 185 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Stsc90630g00054 185 SMART AT_hook_2 165 177 IPR017956 GO:0003677
Stsc90630g00054 185 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Stsc90630g00054 185 MobiDBLite consensus disorder prediction 77 185 - -
Stsc90630g00054 185 Gene3D - 7 85 IPR036388 -
Stsc90630g00054 185 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc90630g00054 185 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00054 Stsc-Chr90630 298572 299988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00054 18 85 Single Myb Histone (SMH) Gene Family AT1G49950 41.176 9.75e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00054 - - gmx:100803968 224.172