Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00050 ATGGCATCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGGAGAGCTAGAGGACGTGGCAGAGCCCGTTCTGGCCGTGGAGCAAGCGGGACTCTAGGTGGTGGAAGAATGAATGGTACTGTTAATGGTAGAAGAATGATGCCTGGTGCTGTGCGCAGAGGTCCTCTCACGGTTAATGCTCGGCCATCATCTTATGCTATCGCAAAGTCCATTCGCAGAGCCAGGCCTTTTCCATGGCAGCATGATTTATTTGAAGATAGCCTTCGAGCTGCTGGGATACAGGGAATTGAAGTTGGCACCAAGTTGTATGTATCGAACTTGGACCATGGAGTAACTAATGAAGACATAAGGGAACTTTTCGCTGAGCTTGGAGAGTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGGCATCAAAGTGGTTCTGCAGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAACAATGTCCTTTTGGATGGAAAACCTATGAAGATTGAGATTGTTGGTGCCAATGCAGAAGTGCCTGTAACTGCTCGTGTGAATGTCACTGGAGTTAATGGGCAGAGGAAACGGACTGTTGTGATGGCGCCTAGAGGAGGTCGAGGTGGAGGTCCTGCTGTCCCTAATCGTGGTGGTGCCGCTGCTGCGGGTGCTGGTTGGGGATATCGTGGCGGCCCGCCAAGGAGTGGGAGTGGGAGTGGACGAGGTCGAGGCCGGGGACGTGGCAGGGCTGGCATCCGAGGTCGTGGGAAAAAGGATGCAGTTGAGAAGTCAGCTGAGCAACTTGATAAAGAATTGGAGAACTATCATGCTGTTGCGATGCAGTTCTGA 870 0.4966 MASSLDMSLDDRIKNRSNRGRARGRGRARSGRGASGTLGGGRMNGTVNGRRMMPGAVRRGPLTVNARPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFAELGELKRYAVHYDKNGHQSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAEVPVTARVNVTGVNGQRKRTVVMAPRGGRGGGPAVPNRGGAAAAGAGWGYRGGPPRSGSGSGRGRGRGRGRAGIRGRGKKDAVEKSAEQLDKELENYHAVAMQF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00050 289 MobiDBLite consensus disorder prediction 208 271 - -
Stsc90630g00050 289 SMART rrm1_1 107 179 IPR000504 GO:0003723
Stsc90630g00050 289 SMART FoP_duplication_2 211 288 IPR025715 -
Stsc90630g00050 289 Coils Coil 265 285 - -
Stsc90630g00050 289 SUPERFAMILY RNA-binding domain, RBD 27 180 IPR035979 GO:0003676
Stsc90630g00050 289 MobiDBLite consensus disorder prediction 1 55 - -
Stsc90630g00050 289 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 288 - -
Stsc90630g00050 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Stsc90630g00050 289 CDD RRM_THOC4 106 180 - -
Stsc90630g00050 289 Gene3D - 102 182 IPR012677 -
Stsc90630g00050 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Stsc90630g00050 289 Pfam C-terminal duplication domain of Friend of PRMT1 226 284 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00050 Stsc-Chr90630 284540 288436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00050 105 240 Eukaryotic Initiation Factors Gene Family AT2G23350 34.307 4.50e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00050 K12881 - gmx:100820344 358.607