Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00047 ATGGGAAGGCAGCCATGTTGTGACAAAGTTGGGTTGAAAAAGGGGCCATGGACTGCTGAGGAGGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGTTAGCAGGGCTGTTAAGGTGCGGAAAAAGTTGCAGGCTTAGATGGACAAATTATCTGAGGCCTGACTTAAAGAGAGGTCTTTTATCAGAATATGAAGAGAAAATGGTCATTGACCTCCATGCTCAATTAGGCAACAGGTGGTCTAAGATCGCTTCACATCTGCCTGGGAGAACTGATAATGAGATAAAGAATCATTGGAACACACACATAAAGAAAAAACTCAAGAAAATGGGAATTGATCCTGTCACACACAAGCCACTTTCTAATACCACCTCTGACCAAAATCAAACCAAACCGGAAGAACCAACACTGAGAGAACAAGAAAAAGAAATAGATCATCTTGAGTCTTCCACAGTTGACCAAAAAGCCAAACTTGTTGAACCTGAAATCAAGGAGGCTGAGGATCAGTTCATGACACCACTGTTTGAATCAATGGACACAATAATAATGAATGGTTTCTGCACAGATGAAGTTCCAATTATAGAAGCTGATGAGATCCTTGCTGCATGTGGTGGTGATGCTTCTACTTCATCAACAACAACAGCAACAACATCTTCATCATTATCATCTTCTGCTTCTTCTTCTAACTCTTATTCAAATCCATCATCCAAGTTCATTGAAGACCTTCTTCTCTCAGACTCTGAATGGTCCAACAACAACAATAGCAGCATGACCTTATGGGATGATCATGACTTTATTAGCAATTTGGACATGCTTCTTAATGATGATTATCATGACTGTGTCAGAAAACAGCAGCAGCAACCTTTTGATGCTTCACTCAATCCGTACCCAAGAATGGTCATGGATTCATCAGAATCTTGGGCTTATGGCTTGTTTTAA 966 0.4099 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNTTSDQNQTKPEEPTLREQEKEIDHLESSTVDQKAKLVEPEIKEAEDQFMTPLFESMDTIIMNGFCTDEVPIIEADEILAACGGDASTSSTTTATTSSSLSSSASSSNSYSNPSSKFIEDLLLSDSEWSNNNNSSMTLWDDHDFISNLDMLLNDDYHDCVRKQQQQPFDASLNPYPRMVMDSSESWAYGLF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00047 321 SMART sant 66 114 IPR001005 -
Stsc90630g00047 321 SMART sant 13 63 IPR001005 -
Stsc90630g00047 321 MobiDBLite consensus disorder prediction 126 140 - -
Stsc90630g00047 321 MobiDBLite consensus disorder prediction 215 242 - -
Stsc90630g00047 321 CDD SANT 16 61 IPR001005 -
Stsc90630g00047 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc90630g00047 321 FunFam MYB-related transcription factor 70 130 - -
Stsc90630g00047 321 Gene3D - 11 67 - -
Stsc90630g00047 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc90630g00047 321 FunFam MYB transcription factor 11 67 - -
Stsc90630g00047 321 MobiDBLite consensus disorder prediction 123 165 - -
Stsc90630g00047 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc90630g00047 321 Gene3D - 70 153 - -
Stsc90630g00047 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc90630g00047 321 MobiDBLite consensus disorder prediction 141 165 - -
Stsc90630g00047 321 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Stsc90630g00047 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc90630g00047 321 CDD SANT 74 112 IPR001005 -
Stsc90630g00047 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc90630g00047 321 Coils Coil 146 166 - -
Stsc90630g00047 321 PANTHER F14D16.11-RELATED 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00047 Stsc-Chr90630 261057 263229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00047 1 285 MYB Transcription Factor Family AT1G66230 55.128 4.51e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90630g00047 Myb_DNA-binding 9.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00047 K09422 - gmx:100803624 400.593