Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00035 ATGACTAGGAAGAAGGTGAAACTGGCTTTCATAGTGAATGATTCAGCAAGGAAGGCAACATTCAAGAAAAGGAAGAAGGGACTATTGAAGAAGGTTGATGAACTCAGTACCCTCTGTGGGATTGATGCATGTGCTATCATCTATAGCCCATATGATCCTCAACCAGAGGTTTGGCCATCACCATTGGGGGTCCAACAAGTGCTTTCCAAGTTCAGGAGGATGCCTGAAATGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTTTGAGGCAGAGGATTGCGAAGGCGACGGAACAGTTGAAGAAGCAGACGAAAGAGAATAGGGAGAAGGAGATGACACAGCTCATGTTTCAGTACCTTGGTGAAGGTAACATCATGCACAATGTGAGCATGCTTGATTTGAATGATCTTGCATATTTGATTGATCAGAATTTGAAGGATATCAATAGAAGGATTGAATTGTTGAGTAGAGAGCCTCAGCCTCAAAGTCAAACCCCAATGCCAGCACCACCTCTTGTTAAAGATGAGGTGGTGGCCAATGTTCAAGATGAGGGACAAGGGAGCCATGCCCAGCAAGGTTTGAACATGAACATGAACATAGATTCCATGCAACCAAAGGAAAATTGGTTTCTCAACTTGATGAATGGTGCTAATGTGGATCAGCCTCATGCATTTGGAGATGCTAATCAACAGAGTGGATTCTGGCCAAACACATTTTTCCATTAA 729 0.4335 MTRKKVKLAFIVNDSARKATFKKRKKGLLKKVDELSTLCGIDACAIIYSPYDPQPEVWPSPLGVQQVLSKFRRMPEMEQSKKMVNQESFLRQRIAKATEQLKKQTKENREKEMTQLMFQYLGEGNIMHNVSMLDLNDLAYLIDQNLKDINRRIELLSREPQPQSQTPMPAPPLVKDEVVANVQDEGQGSHAQQGLNMNMNIDSMQPKENWFLNLMNGANVDQPHAFGDANQQSGFWPNTFFH 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00035 242 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Stsc90630g00035 242 PANTHER MADS BOX PROTEIN 3 123 - -
Stsc90630g00035 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc90630g00035 242 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Stsc90630g00035 242 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Stsc90630g00035 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Stsc90630g00035 242 Coils Coil 87 115 - -
Stsc90630g00035 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc90630g00035 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc90630g00035 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc90630g00035 242 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00035 Stsc-Chr90630 179176 179992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00035 1 156 Type I MADS-box Gene Family AT5G48670 69.872 1.26e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc90630g00035 SRF-TF 7.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00035 - - adu:107480964 438.343