Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00034 ATGGTTTTGTCTTGGACCAAAAGAAACCCCTTATTCCGCCGTCTCCGTAAGGTTACCAAGGACCATCAACCTCCCTCCGCCGACGATGACATTGTCATCCCCCCACACTTCTGCTGCCCAGTCACCCTCGACATAATGAAAGACCCAGTTACCCTCTCTACCGGCATCACCTACGACAGGGACAGCATCGACACGTGGCTTCAATCCGGTAACAACACCTGCCCCGTCACCAAACAGCTCCTAACTACCTCTGACGTCATCCCCAACCACGCCATCAGGAAGATGATTCAGGATTGGTGCGTCGATAACAGCTCCTATGGCGTCCAGAGGATCCCCACTCCTAGGGTTCCTGTTTCAACGTGCGAGGTTTCCCGCACGTGTACCACCCTCTTGTCCGCTTCACAGCGTGCTGATGATGCCACGTGTCGGGAATCTTTGGCCAAGATCAAGGCTTGGGGGAAGGAGAGCGAGAGGAACAAGAGGTGTGTCGTTGGGAACGGTTCCGCTGATGTACTCGCACGTGCCTTTCACAACTTCTCACGTGATTCAGTTCACAAGCATGTGGTTGTGTTGGCAGAGATTTTGGATAATCTGACGTGGATGCTTCCTATTGGCCAAGAGGGTAAAGAGTGTTTGGGTTCGGAAAATTCGTTGGGTTCGTTGGTTTTGTTCCTAGGTGGTAATGACCTTGGAGCAAGACAAAGTGCTTCTTTGGTGATTAAGGAGCTAAGTGCTGAAGCATTGGAGAAAAATGAACAAATAATTGAGGCTTTGGTTAACATGATTAGGGAGCCGGTTGCTCCAATTGCTACAAAATCATGTTTGGCCACAATTTTCAATTTGGTTTCATTAGGAGAAAGTAGGGAACTAATTGCAGAGAGATTTGTGGATTTAGGTTTGGTTTCATTGCTATTGGATATCATTGTTGATGGTGAAAGAGGGATAACTGAGAAGGCATTGGGTGTTTTGGATTCCATTTGTGATTTCCAAAAGGGGAGGGATTTTGCTAAGGGGAATGCTCTAATGGTTCCTCTTGCAATCAAGAAGATCCTGAGAGTGTCAGGCTTGGCCTCTAGCTTTGCGGTTTCTATACTTTGGAAGGTTTGGGATAAGAGTGATGAAGGGGGTTTGATTGAGGCCCTTCAAGTAGGTGCCTTTCAGAAATTGTTGGTTGTGTTGCAAGTTGGTTGTGATGATAGCACTAAGGAGAAGGCTACTGACTTGTTGAAACTGTTGAATGCTTATAGAGGCAAAGCAGAGTGTGTTGATTCTTCTTCTTTGGAACTCAACTACCTTAAGAAGCCATTCTAA 1311 0.4699 MVLSWTKRNPLFRRLRKVTKDHQPPSADDDIVIPPHFCCPVTLDIMKDPVTLSTGITYDRDSIDTWLQSGNNTCPVTKQLLTTSDVIPNHAIRKMIQDWCVDNSSYGVQRIPTPRVPVSTCEVSRTCTTLLSASQRADDATCRESLAKIKAWGKESERNKRCVVGNGSADVLARAFHNFSRDSVHKHVVVLAEILDNLTWMLPIGQEGKECLGSENSLGSLVLFLGGNDLGARQSASLVIKELSAEALEKNEQIIEALVNMIREPVAPIATKSCLATIFNLVSLGESRELIAERFVDLGLVSLLLDIIVDGERGITEKALGVLDSICDFQKGRDFAKGNALMVPLAIKKILRVSGLASSFAVSILWKVWDKSDEGGLIEALQVGAFQKLLVVLQVGCDDSTKEKATDLLKLLNAYRGKAECVDSSSLELNYLKKPF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00034 436 CDD RING-Ubox_PUB 34 86 IPR045210 -
Stsc90630g00034 436 PANTHER WDSAM1 PROTEIN 31 421 IPR045185 GO:0061630
Stsc90630g00034 436 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Stsc90630g00034 436 SUPERFAMILY ARM repeat 206 412 IPR016024 -
Stsc90630g00034 436 SUPERFAMILY RING/U-box 24 108 - -
Stsc90630g00034 436 Gene3D - 122 415 IPR011989 -
Stsc90630g00034 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 110 IPR013083 -
Stsc90630g00034 436 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Stsc90630g00034 436 FunFam RING-type E3 ubiquitin transferase 33 104 - -
Stsc90630g00034 436 Pfam U-box domain 33 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00034 Stsc-Chr90630 177260 178820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00034 2 436 U-box Gene Family AT5G37490 44.570 1.16e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00034 - - gmx:548086 550.821