Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00033 ATGACTTCACTGTCGCAGGTTTGGTTGCACCAGAACTCCTTTTCTGGGCCTTTGCCCGATTTTTCTGGCTTACAAAACTTGCAAGATTTGAGCTTCAGGGATAACTCTTTCACGGGTCCTGTCCCTGCTTCTCTGCAGACCCTAAAGTCGCTTAAAGTTGTGAACTTGACTAATAACTTGTTGCAGGGTCCAGTTCCTGTGTTTGGTTCTGGTGTTGTTGTTGATGATAGTGGTTTGAACAGTTTTTGTTTGACTAAGCCAGGTGATTGTGATTCCAGAGTGAATGCTCTGCTTTCTATTGTTAGGTCTATGGGTTATCCCCAAAGGTTTGCTGAGAATTGGAAAGGGAATAATCCTTGTAATGATTGGATTGGGATTACTTGTAGTAATGGGAACATCACTGTTATTAATTTTCAGAAGATGGGGCTTAACGGCACGATATCACCCGATTTTGCATCTCTCAATTCACTGCAAAGGTTGGTTCTTGCTGATAATAACCTTACTGGTCCAATCCCTGAGGAGCTAGCTACTCTTCCTGTTCTTACTCAGCTGAATGTTGCAAACAATCAGCTTTATGGGAAGGTTCCAAAGTTTAAGAGCAATGTAGCTGTTACCATAGATGGTAACAAGGATATAGGGAAGGATAAGCCTAGCCCGTCCCCGCCAGGTTCGGCTCCCAATTCACCTGCTTCAAACACAATAGAAGGAAATGGTGGCAAAAAGAAGTCTTCGCATGTACTACTGATTGTTCTTGCTGTTGTTGGAGGTCTAGTGTTGATTGCTTTGATTGCTTTATTGGCTTTCTGCTTGTATAGGATGAAGCAAAAACAGCTCAGCAAGGTGCAAAGTCCGCGTGAATTAGTTATCCATCCTCGTCATTCTGGGTCGGATAATGAAAGTGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGTGTTGGTAATGTTAGTGAGTCGCAAACTGTGCCCGGAAGGGAGGGAGGGGACATACAGATGGTCGAAGCGGGAAATATGGTCATTTCTATACAAGTCCTGAGGAATGTCACTAACAATTTCAGTGAGCAAAATATATTGGGGCAAGGAGGTTTTGGAACAGTTTATAAAGGTGAATTACATGATGGCACGAAAATTGCCGTTAAAAGAATGGAGACCGGAGCAATATCTGGTAAAGGGGCAGCTGAGTTTAAGTCTGAAATTGCTGTTTTGACTAAGGTTCGCCACCGGCATCTTGTCTCGCTTCTCGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGGACGTTAAGTAGGCATCTGTTTAACTGGTTAGAAGAAGGACTAAAGCCGATGGAGTGGAATAGAAGATTAACCATTGCACTGGATGTGGCAAGGGCTGTTGAGTATCTTCATAGCTTGGCCCATCAAAGCTTTATACATAGGGACTTAAAGCCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTCGGTCTTGTTCGTCTTGCTCCAGAAGGCAAGGCTTCAATAGAAACAAGAATTGCAGGAACTTTTGGGTATTTGGCTCCAGAATATGCAGTTACCGGCCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGTGTGATATTAATGGAACTATTAACCGGAAGAAGAGCACTTGATGAGACCCAACCCGAGGATAGCATGCATCTTGTTACATGGTTCCGCAGAATGTACATAAACAAGGACACATTCCGCAAGGCCATTGACCCTGCAATCGAGCTCAATGAGGAAACTCTCGCAAGTGTACACACGGTGGCAGAGTTGGCCAGCCACTGCTGTGCGAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCTGTCAACGTGCTCGCCTCTCTTGCAGAACTCTGGAAACCATCTGATCAGAACCCCGAAGACATATATGGCATTGACCTCGACATGTCTTTGCCGCAAGCGCTTAAGAAGTGGCAGGCTTATGAAGGTGGAAGCCATATGGAGTCATCATCTTCTTCGCTCCTACCTAGCTTGGACAACACGCAAACAAGCATCCCTACCCGTCCTTACGGATTCGCGGAATCCTTCACCTCAGCAGATGGGAGGTGA 2115 0.4511 MTSLSQVWLHQNSFSGPLPDFSGLQNLQDLSFRDNSFTGPVPASLQTLKSLKVVNLTNNLLQGPVPVFGSGVVVDDSGLNSFCLTKPGDCDSRVNALLSIVRSMGYPQRFAENWKGNNPCNDWIGITCSNGNITVINFQKMGLNGTISPDFASLNSLQRLVLADNNLTGPIPEELATLPVLTQLNVANNQLYGKVPKFKSNVAVTIDGNKDIGKDKPSPSPPGSAPNSPASNTIEGNGGKKKSSHVLLIVLAVVGGLVLIALIALLAFCLYRMKQKQLSKVQSPRELVIHPRHSGSDNESVKITVAGSSVSVGNVSESQTVPGREGGDIQMVEAGNMVISIQVLRNVTNNFSEQNILGQGGFGTVYKGELHDGTKIAVKRMETGAISGKGAAEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSRHLFNWLEEGLKPMEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELLTGRRALDETQPEDSMHLVTWFRRMYINKDTFRKAIDPAIELNEETLASVHTVAELASHCCAREPYQRPDMGHAVNVLASLAELWKPSDQNPEDIYGIDLDMSLPQALKKWQAYEGGSHMESSSSSLLPSLDNTQTSIPTRPYGFAESFTSADGR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00033 704 SMART serkin_6 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90630g00033 704 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Stsc90630g00033 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Stsc90630g00033 704 Pfam Protein kinase domain 352 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90630g00033 704 Pfam Leucine rich repeat N-terminal domain 93 129 IPR013210 -
Stsc90630g00033 704 SUPERFAMILY RNI-like 2 201 - -
Stsc90630g00033 704 FunFam Leucine-rich repeat receptor-like kinase 92 215 - -
Stsc90630g00033 704 Gene3D Ribonuclease Inhibitor 91 216 IPR032675 -
Stsc90630g00033 704 MobiDBLite consensus disorder prediction 668 704 - -
Stsc90630g00033 704 PANTHER OSJNBA0070M12.3 PROTEIN 1 704 - -
Stsc90630g00033 704 SUPERFAMILY Protein kinase-like (PK-like) 339 640 IPR011009 -
Stsc90630g00033 704 FunFam receptor protein kinase TMK1 313 428 - -
Stsc90630g00033 704 MobiDBLite consensus disorder prediction 209 237 - -
Stsc90630g00033 704 Gene3D Ribonuclease Inhibitor 1 86 IPR032675 -
Stsc90630g00033 704 MobiDBLite consensus disorder prediction 668 693 - -
Stsc90630g00033 704 Gene3D Transferase(Phosphotransferase) domain 1 429 646 - -
Stsc90630g00033 704 Gene3D Phosphorylase Kinase; domain 1 313 428 - -
Stsc90630g00033 704 CDD STKc_IRAK 357 627 - -
Stsc90630g00033 704 FunFam receptor protein kinase TMK1 429 646 - -
Stsc90630g00033 704 ProSiteProfiles Protein kinase domain profile. 351 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00033 Stsc-Chr90630 173518 176239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00033 219 640 Trihelix Transcription Factor Family AT1G70460 36.323 3.16e-81 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc90630g00033 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00033 K00924 - gmx:100789646 1095.49