Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00032 ATGAAACCAAGATTTGATCTTGAATTAGAGGCCTCAGCAGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAACATATCCTCTCTTCAAGAAACACTCTCACTTGATTTAACTCTTAGCTTCGGCAACAAGGAAACAGGGGAAAAAGCAGGGGAATCAATAGGACTCTCATTCTCTAGCACTAGTGAAAGCAGCAATGAACCAACTTTCCAAACTGGTGCTGCAACAGTGCCTAGAGTCTTCTCTTGCAATTACTGTCAGCGCAAATTCTTCAGCTCGCAGGCTCTCGGCGGCCACCAGAATGCACACAAGAGGGAGCGAACGCTGGCAAAACGAGCCATGAGAATGGGACTATTCTCTGAGAGGTATGCTAGTTTAGCATCTTTGCCTCTTCATGGCTCATTCAGATCCTTGGGGATTAAGGCACATTCTTCAATTCACCCCCAAGCATTTGCACCATCAATTAGGCCTCCTGAGATGAAAACCAATGCAAGGTTCGACCAAGGCTATGTCGGCCTTCCAATATTCTTGGAGGATGATGAGTCAGAACTGCTCTGGCCAGGCAGTTTCCGGCAGGTTTCGACCGAAGGAGGAGGCGATAGCAATCAGAATTTCGTGCTGGCGAGGAGTTCGAACTTGAGTTTTACTGAGGTGAATCCAGCAGTTGAGATAGAGAAGTCTACACCTGAATTAACATTGAAGCTTTAA 714 0.4636 MKPRFDLELEASAAEYESEVSSQVASNISSLQETLSLDLTLSFGNKETGEKAGESIGLSFSSTSESSNEPTFQTGAATVPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGLFSERYASLASLPLHGSFRSLGIKAHSSIHPQAFAPSIRPPEMKTNARFDQGYVGLPIFLEDDESELLWPGSFRQVSTEGGGDSNQNFVLARSSNLSFTEVNPAVEIEKSTPELTLKL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00032 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Stsc90630g00032 237 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 160 IPR044246 GO:0009788
Stsc90630g00032 237 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Stsc90630g00032 237 SUPERFAMILY beta-beta-alpha zinc fingers 81 110 IPR036236 -
Stsc90630g00032 237 FunFam Zinc finger protein 2 60 129 - -
Stsc90630g00032 237 Gene3D Classic Zinc Finger 61 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00032 Stsc-Chr90630 162616 165247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00032 1 237 C2H2 Transcription Factor Family AT1G66140 47.037 8.10e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc90630g00032 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00032 - - gmx:100794851 317.005