Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00019 ATGCCCATTCCAGTGCCACCACCGCCGCTTCACGCCTTCACCATCTTCATCTCCACCCTCATTGCTATTTTAACAACCAATGCCACCCAATTCGACTTCGACACACTCACCCTCACCACTCTCAACCTCCTCGGCGATGCTCACATTACCAATGACACCATCACCCTCACCGCCCACCCTACCGTTCCCAACTCCGCCGCCGCTAGAGCTCTCTACTCCAACCCTATCCCTTTCCGCCACCCCACCACCTCCGCTCCTGCCTCCTTCTCCACCGTCTTCTCCTTCTCCATCACCAACCTCAACCCTTCCTCCATCGGCGCCGGCCTCGCCTTCCTCATCTCCCCGGACGACCACTCCCTCGGAGATTCCGGACCCTCCTTAGGCCTCTCCGGCCCCGACGCCGCTCCAAACTTCCTCGCCGTGGAGTTCGACACACTCATGGATCTCCAGCTCAACGACATCAACGGCAACCATGTCGGCATTGACCTCAACGGCGTCGTTTCAACTCAAGCCGCCGATTTGGGAGCCCTTGATATCGACCTCAAGAGCGGCGACACCGTCAACGCATGGATCCAGTACGACGCAACCACCAATGACTTCACCGTTTCGGTCTCATACTCCAATGTGAAGCCCAAAGATCCCGTTTTGAAGCTGAATCTCGATATGGGTCAGTACGTGAACGATTTCATGTACGTTGGCTTCTCTGGGTCTACCCAAGGTAGCACCGAGGTTCACAGTATCCAGTGGTGGAGCTTCACTTCTAGCTTCGATTCTGCGCCGCCTCCTCCAACGGCTATTTTAACCAACCCAAGTGCTAGTAGTAGTAGTAGTAGCTCTGCCTCGTTGGCACCACCTTCATTGGCTCCTTCTGGTGCTGAAGAACGGAAGCAAGACGGTAAATCGGGTGTCGGTGCTGGTGCTGTTGCTGGTGTTGTTACTGCGGGTGCTTTTGTTCTTGCTCTATTTGCTAGTGTCTTGATTTGGGTTTACTCTAAAAAGATGAAACCTTTCAAGAGGCCTGATTCTCTTGGTTCTGATGTTATTAGAATGCCTAAGGAGTTTACCTATAAGGACCTTAAATTGGCAACGAATTGCTTCAGTGTTAATAGGGTCATTGGCCATGGTGCATTTGGTACTGTCTATAAGGCAATTTTGCCAGCCACTGGTGACATTGTTGCTGTCAAGAGGTGCAACCATGGTGGTGATCAGGGCAAGGATGAGTTCTTGTCTGAGTTGTCCATAATTGGGACACTGAGGCACCGGAACCTGGTTCGCCTTCTGGGATGGTGCCATGAGAAAGGGGAGATTTTGTTAGTTTATGACTTGATGCCTAATGGGAGTTTAGATAAGGCCTTGTATGAGGCCAAAACACCTTTGCCTTGGGATCATCGGCAAAAAATCTTGTTGGGTGTGGCCTCTGTTTTGGCCTACTTGCATCATGAATGTGAGAATCAAGTCATTCACAGGGATATTAAGACTAGCAACATAATGCTGGATGAAGGGTTCAATGCCCGGTTGGGTGACTTTGGATTGGCAAGGCAGACAGAACATGACAAGTCCCCGGATGCCACTGTCGCCGCTGGAACAATGGGGTACCTTGCACCGGAGTATGTCCTCACGGGTAGAGCCACTGAGAAAACCGATGTGTTTAGCTACGGTGCTGTGGTTCTTGAGGTTGCTAGTGGGAGAAGGCCTATAGAGAAAGATGCTAATGGTGTTGGTAGAGTTGGGGTTAGCAGCAATTTGGTGGAATGGGTTTGGAGCTTGCACCAAGAAGGAAAGTTGCTGATGGCAGCTGATCCGAGGCTTGAGGGTGAGTTTGAAGAAGGGGAGATGAGGAGGGTTATGTTGGTTGGGCTAGCTTGTTCACACCCTGATGCGATGGCAAGACCAAGTATGAGGAGTGTGGTTCAGATGCTAATGGGTGAGGCTGAAAGAGCAGCTTCAATGACATAG 1956 0.5138 MPIPVPPPPLHAFTIFISTLIAILTTNATQFDFDTLTLTTLNLLGDAHITNDTITLTAHPTVPNSAAARALYSNPIPFRHPTTSAPASFSTVFSFSITNLNPSSIGAGLAFLISPDDHSLGDSGPSLGLSGPDAAPNFLAVEFDTLMDLQLNDINGNHVGIDLNGVVSTQAADLGALDIDLKSGDTVNAWIQYDATTNDFTVSVSYSNVKPKDPVLKLNLDMGQYVNDFMYVGFSGSTQGSTEVHSIQWWSFTSSFDSAPPPPTAILTNPSASSSSSSSASLAPPSLAPSGAEERKQDGKSGVGAGAVAGVVTAGAFVLALFASVLIWVYSKKMKPFKRPDSLGSDVIRMPKEFTYKDLKLATNCFSVNRVIGHGAFGTVYKAILPATGDIVAVKRCNHGGDQGKDEFLSELSIIGTLRHRNLVRLLGWCHEKGEILLVYDLMPNGSLDKALYEAKTPLPWDHRQKILLGVASVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDANGVGRVGVSSNLVEWVWSLHQEGKLLMAADPRLEGEFEEGEMRRVMLVGLACSHPDAMARPSMRSVVQMLMGEAERAASMT 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00019 651 FunFam L-type lectin-domain containing receptor kinase VIII.1 27 265 - -
Stsc90630g00019 651 SMART serkin_6 366 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90630g00019 651 MobiDBLite consensus disorder prediction 263 285 - -
Stsc90630g00019 651 MobiDBLite consensus disorder prediction 263 300 - -
Stsc90630g00019 651 Pfam Legume lectin domain 29 261 IPR001220 GO:0030246
Stsc90630g00019 651 FunFam L-type lectin-domain containing receptor kinase VIII.1 443 650 - -
Stsc90630g00019 651 PANTHER - 47 643 - -
Stsc90630g00019 651 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Stsc90630g00019 651 SUPERFAMILY Protein kinase-like (PK-like) 348 640 IPR011009 -
Stsc90630g00019 651 Pfam Protein kinase domain 367 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90630g00019 651 Gene3D Phosphorylase Kinase; domain 1 351 442 - -
Stsc90630g00019 651 Gene3D Transferase(Phosphotransferase) domain 1 443 650 - -
Stsc90630g00019 651 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 342 442 - -
Stsc90630g00019 651 CDD STKc_IRAK 372 642 - -
Stsc90630g00019 651 CDD lectin_legume_LecRK_Arcelin_ConA 45 256 IPR001220 GO:0030246
Stsc90630g00019 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 259 IPR013320 -
Stsc90630g00019 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Stsc90630g00019 651 Gene3D - 26 262 - -
Stsc90630g00019 651 ProSitePatterns Protein kinases ATP-binding region signature. 372 395 IPR017441 GO:0005524
Stsc90630g00019 651 ProSiteProfiles Protein kinase domain profile. 366 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00019 Stsc-Chr90630 94107 96176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00019 13 645 Receptor kinase-like Gene Family AT3G53380 64.643 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc90630g00019 Pkinase 7.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00019 - - var:108341139 874.774