Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00017 ATGGTTCTCTCTAAGACGGCTTCTGAGAGCGACGTCTCGGTGCACTCAACGTTTGCATCGCGCTATGTGAGGACCTCGCTTCCCAGGTTCAAGATGCCAGAGGAGTCGATCCCCAAGGAGGCAGCGTACCAGATAATAAACGACGAGCTCATGCTTGACGGAAACCCCAGGCTTAACCTCGCCTCCTTCGTTACTACCTGGATGGAGCCGGAGTGCGACAAGCTCATAATGGCCGCCATTAACAAGAACTACGTTGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGGTGTGTAAACATGATAGCTCATCTATTCAATGCACCACTTGGAGATTCAGAGGCTGCAATTGGTGTTGGGACGGTTGGATCATCGGAGGCCATAATGCTGGCTGGATTGGCATTCAAAAGAAAATGGCAGAACCAAAGGAAAAAAGACGGTAAGCCTTATGACAAGCCCAACATTGTCACTGGTGCCAATGTGCAGGTTTGCTGGGAGAAATTCGCAAGGTACTTTGAAGTCGAGTTGAAGGAGGTTAAGCTCCGTGACGGATACTATGTTATGGACCCTGAAAAGGCTGTTGAGTTGGTTGATGAGAACACCATTTGTGTTGCTGCTATTCTTGGTTCCACCCTCAACGGCGAGTTTGAAGATGTCAAGCGCTTAAATGATCTTCTTATCCAAAAGAATAAAGAAACCGGCTGGGATACTCCTATTCATGTTGATGCTGCCAGTGGTGGTTTCATTGCTCCCTTTCTATATCCTGACCTTGAGTGGGACTTCCGCTTACCTCAGGTCAAGAGCATCAATGTCAGCGGCCACAAGTACGGTCTAGTTTATGCCGGAATTGGTTGGGTTATCTGGAGAAACAAGGATGACCTGCCTGAGGAACTCATCTTCCACATCAACTATCTAGGAGCTGATCAACCCACATTCACTCTTAACTTCTCCAAAGGTTCCAGTCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGATATAAAAATGTGATGGAAAATTGTAGGGACAACATGTTAGTGCTCAAGGAAGGACTTGAGAAAACAGGGCGCTTTAACATTGTGTCCAAGGACGATGGTGTTCCTTTGGTGGCCTTCACACTCAAAGACCACAGCCGCTTCGATGAATTCCAAATCTCTGACTTGCTGAGGCGCTTTGGCTGGATAGTGCCTGCATACACCATGCCCCCGGATGCACAGCATGTTACCGTGCTGCGTGTGGTCATCCGGGAGGACTTCTCCAGGACACTCGCCGAGCGCCTTGTGTGTGATGTGGAGAAGGTGCTTCATGAGCTTGATATGCTTCCGGCGAAGGTGGTCGCGGCTAATGGAGAAGAGGCAGCAGCTAGCGGTAATGGCAAGGCTAAGAAGACTCCTCTGGAGACACAGAGGGAGATCACTGCAGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGATGAATGATAAGATGAATGGCGTTTGTTAA 1503 0.4857 MVLSKTASESDVSVHSTFASRYVRTSLPRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSEAAIGVGTVGSSEAIMLAGLAFKRKWQNQRKKDGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPQVKSINVSGHKYGLVYAGIGWVIWRNKDDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMLVLKEGLEKTGRFNIVSKDDGVPLVAFTLKDHSRFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVCDVEKVLHELDMLPAKVVAANGEEAAASGNGKAKKTPLETQREITAVWKKFVLERKKMNDKMNGVC 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00017 500 FunFam Glutamate decarboxylase 361 448 - -
Stsc90630g00017 500 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Stsc90630g00017 500 Gene3D - 361 448 - -
Stsc90630g00017 500 FunFam Glutamate decarboxylase 1 65 - -
Stsc90630g00017 500 FunFam Glutamate decarboxylase 66 360 - -
Stsc90630g00017 500 Gene3D - 66 360 IPR015421 GO:0003824
Stsc90630g00017 500 Gene3D - 1 65 - -
Stsc90630g00017 500 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc90630g00017 500 PANTHER GLUTAMATE DECARBOXYLASE 1 491 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc90630g00017 500 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00017 Stsc-Chr90630 89057 93648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00017 1 500 Calmodulin-binding Proteins AT5G17330 82.609 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00017 K01580 - gmx:100796533 926.006