Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00012 ATGGGGAAAGTATTTGCAATGGGAAGCGCAAGACATGGACAGCTCGGAAATCCTCACGCCAGGGATAGAGCAGTAATGGTTGAAGGACAGCTTAAACAGGAGTTTGTTAAAGTGATTTCAGCTGGTTCATATCATGTTGCCGTTTTGACTTCGGCTGGAAGTGTTTATACATGGGGCAAAGGTGAAAATGGTCAACTTGGACTAGGTGATACCGAAGACAGATACACGCCTTCTTTTGTTGAGGCTCTAAGAGACAGGCAAGTAGAAGCAATAACTTGTGGATCAAGTTTCACTGCTGCAATCTGTTTACACAAGCCGATTTCTATCAGTGACCAGTCAACTTGTAGCGGGTGTAGGCTTCCGTTTGGATTCACAAGGAAGAAGCATAACTGTTATGACTGTGGCCTTCATTTCTGCCGAGCTTGTAGTAGTAAAAAGGTTATAAACGCGACTCTAGCCCCGAGTAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGCTATGAGAGAAGGCAAGGAAGTACACATTCAGCAGCGGCTTTGAAGTCTAGAAATTGCAACTCTCGGCAGCTACACAGACTTCCTGACTTGACTGAAGATAGAGGAGAGACAACTATGGCACAGGGTCCTCTCTTGACACTTGGCCAATCATGTTATAGGAAAAGCATGCCGAGCGGACGAAAGGACTGGAAAAACCAACAAGAGAGCCAGCAGAATTTAGAAGATAGTTCTTCTTCTTCTATGTTAGGTGGGTTGCCCCAATGGGGTCAAGTTCCATGTCCTGCCCAATTTAGAATCAATTGTAAAGAGAATTTGGCAGGGCATGTTTCTTCATCAAAAACTAAAACTATTGTTGCCCCACCAAACATAGAATCTCCGGCATTCATTTCTAGTGCAGAGTCAGATACAACAAAGTCTGATAAGATGCTCATTGAAGAAGTTCAGAGGCTGAGAGCTGAGTTAAAGAGACTTGAAGAGCAGTGCGAAATCAAGAACCATAAGATACAAGAGTGTCAACAGAGAATTGAGGAGAGTTGGTCTGTAGCAAAGGAGGAAGCTGCAAAGTCCAAAGCAGCAAAAGAGGTCATAAAAGCTTTAGCTGTAAGGCTTCATACAATATCAGGAAAAGAGAATGCTGGACAAGAAGGGAAAGTTGGGATACAAGAATGCATGCCTAATTTGGCACCCATACATACAGATATGAATAGTCCCAGGGATGGCAACATGGACAGCCTATCTAATTCCCCTATAGTATTCTCAGATTCATTAAAATCAAAATTTGGGAGAAACATGTTTCTCAAGAACGATGGAGCAACGGAAAATTCTAGCATCGCAAAACCGCAGTCACAGCAAGACAGTGCTGACAGCATGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCTTGTGGGAGAAAGGGCCTTAAAAGAGTCAGATTCAGCCGGAAACGGTTCTCGGAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGGCAGAGTGTACCATAAATATGAGATTGAAGGGTATATAAACAATAGCCAAAGTCAGGTGAAAGGCTAA 1584 0.4362 MGKVFAMGSARHGQLGNPHARDRAVMVEGQLKQEFVKVISAGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRYTPSFVEALRDRQVEAITCGSSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYDCGLHFCRACSSKKVINATLAPSKSKAFRVCDQCYERRQGSTHSAAALKSRNCNSRQLHRLPDLTEDRGETTMAQGPLLTLGQSCYRKSMPSGRKDWKNQQESQQNLEDSSSSSMLGGLPQWGQVPCPAQFRINCKENLAGHVSSSKTKTIVAPPNIESPAFISSAESDTTKSDKMLIEEVQRLRAELKRLEEQCEIKNHKIQECQQRIEESWSVAKEEAAKSKAAKEVIKALAVRLHTISGKENAGQEGKVGIQECMPNLAPIHTDMNSPRDGNMDSLSNSPIVFSDSLKSKFGRNMFLKNDGATENSSIAKPQSQQDSADSMKVEWVEQYEPGVYITFTTLPCGRKGLKRVRFSRKRFSEKEAERWWEENQGRVYHKYEIEGYINNSQSQVKG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00012 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 170 IPR013083 -
Stsc90630g00012 527 Pfam Transcription factor regulating root and shoot growth via Pin3 458 512 IPR013591 -
Stsc90630g00012 527 SUPERFAMILY RCC1/BLIP-II 2 182 IPR009091 -
Stsc90630g00012 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 53 104 IPR000408 -
Stsc90630g00012 527 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 2 373 - -
Stsc90630g00012 527 SMART fyve_4 103 172 IPR000306 GO:0046872
Stsc90630g00012 527 Coils Coil 306 340 - -
Stsc90630g00012 527 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 109 171 IPR017455 -
Stsc90630g00012 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 2 52 IPR000408 -
Stsc90630g00012 527 Pfam FYVE zinc finger 111 169 IPR000306 GO:0046872
Stsc90630g00012 527 MobiDBLite consensus disorder prediction 221 250 - -
Stsc90630g00012 527 CDD FYVE_like_SF 114 167 - -
Stsc90630g00012 527 ProSiteProfiles BRX domain profile. 458 513 IPR013591 -
Stsc90630g00012 527 MobiDBLite consensus disorder prediction 228 250 - -
Stsc90630g00012 527 Pfam Regulator of chromosome condensation (RCC1) repeat 53 101 IPR000408 -
Stsc90630g00012 527 Gene3D - 1 115 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00012 Stsc-Chr90630 59802 61976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90630g00012 454 517 Major Intrinsic Protein MIP AT1G31880 45.312 1.21e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00012 - - adu:107481014 945.266