Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90630g00006 ATGACCATTCATGATCAGAATCAAGTTACTGCATCACAGGGTAGTCCTCGCGTAGGAAATAGAGTACCTTCGGATTCTGAATTGCATTCTGTTTCAAATATTCAACTCAATGACCAATTTTCAACCACAAATGATGGTGTTCTCAAGGTGAGGAAACCATACACCATCAAAAAACAAAGAGAGAGGTGGACAGATGAGGAACACAAGAAGTTCCTTGAGGCTTTAAAGCTGCATGGCCGGGCCTGGCGTCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTAGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGACTCCAGTGGTAAGATTATCAACTCTACAGAGTCAATTGAAATTCCTCCTCCAAGACCGAAACGAAAGCCGATGCATCCTTACCCCCGTAAGCTAGTAGAGACTCCTAACAAAATAACTTCGGTCAAAGAGCAGCCAAAGAGGTCTAATTCTCTGAAGTCACGAGCAGATTTTGATCAAGAGAACCAATCTCCCAAATCAGTCTTAACTGGAGTTGGTTCAGACAGTAGTCTTGGTTCCTCAGATTCAAGCGGCTATACAGTTGTGGAACCCAAAACCCCATCCGAGGAAGCTGGACTAAATGCTGATTCAGCTCACAATGATCACCCTCTTGCGAGGTCCAATAAGGAAATCAAAGAAAGCATGGAAGAAGAATCATTTGGTCGGACTGTAAAGCTTTTTGGGATGACTCTATCGGTAACAAACACATGCAGAACCTCACTTCCATCAACTGAGGCATGCAAACCAATACCTGTACACATAAATGTGCATTGCTTTGGCAAGGGGGAAGGGAAATTGGAACTTCCTAGCCACATTGTTCCTGGTGATGATACTAGAGCAACATCCAAGCTGAGGATTAGAATGAGAACTGAAACATGTGGGAGAGGTTTTGTGCCATACAAAAGGTGCATGGCTGAGAGAGAAAAAAACCACTCTTCCACGGATAAGAGAGAAGAGCAAGTTATCCAGCTTTCGTTATAG 1032 0.4322 MTIHDQNQVTASQGSPRVGNRVPSDSELHSVSNIQLNDQFSTTNDGVLKVRKPYTIKKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSSGKIINSTESIEIPPPRPKRKPMHPYPRKLVETPNKITSVKEQPKRSNSLKSRADFDQENQSPKSVLTGVGSDSSLGSSDSSGYTVVEPKTPSEEAGLNADSAHNDHPLARSNKEIKESMEEESFGRTVKLFGMTLSVTNTCRTSLPSTEACKPIPVHINVHCFGKGEGKLELPSHIVPGDDTRATSKLRIRMRTETCGRGFVPYKRCMAEREKNHSSTDKREEQVIQLSL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90630g00006 343 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Stsc90630g00006 343 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Stsc90630g00006 343 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Stsc90630g00006 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Stsc90630g00006 343 MobiDBLite consensus disorder prediction 1 27 - -
Stsc90630g00006 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Stsc90630g00006 343 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Stsc90630g00006 343 SMART sant 59 107 IPR001005 -
Stsc90630g00006 343 MobiDBLite consensus disorder prediction 166 200 - -
Stsc90630g00006 343 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Stsc90630g00006 343 MobiDBLite consensus disorder prediction 119 223 - -
Stsc90630g00006 343 CDD SANT 62 105 IPR001005 -
Stsc90630g00006 343 PANTHER SWI/SNF COMPLEX-RELATED 36 260 - -
Stsc90630g00006 343 Gene3D - 62 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90630g00006 Stsc-Chr90630 29295 32290 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc90630g00006 Myb_DNA-binding 5.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90630g00006 - - lang:109345156 374.4