Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90629g00075 ATGGATCTTCAATCTCCTTTCTCCTCTACTCATTCCTTCAACTTTGACCATGCATGGAAATATGATGTTTTTATTAGCTTTAGAGGCCAAGACACTCGCTACGGTTTCACTGGCAATCTTTGCAATGCTCTTTGTCGTAAAGGAATCCACACTTTCATTGATGATGAGGAGCTTCAAAGGGGAGACGAAATTACTCCCTCACTTCTCAGCGCAATTCAAGAGTCTAGGATTGCCATCATTGTCCTCTCTCCTAACTATGCTTCTTCCTCTTTTTGTTTAGATGAGCTTGTCCATATCCTTCACTGCATTAAGGGAAAGAATCGGTTGGTTTTGCCAGTTTTCTTTGAGGTGGATCCTTGTGATGTGCGCCATCAAAGAAATAGTTTTGGAGAAGCAATGGCTAAGCATGAGAAGAGATTCAAGGATGACTTGAACAAGGTGCAAAAATGGAAGGAGGCTCTGCATCAAGTAGCTAATTTGTCTGGCTATCATTTCAAACATGGGGATGGATATGAGCACATGTTTATTGGAAACATTGTGGAAAACATCTCAAAAAGGATTAAACGACATGGAGCTTTGCCTGTTGCTGATCACCTAGTTGGATTGGAGTCCCCAGTGTCAGCGGTAGCTTTGCTTCTAGATGTTGAATCTAATACTGGTGTTCACATGGTAGGGATATATGGAATTGGTGGAATAGGTAGAACAACACTTGCTCTTGTTGTTTACAACTTGATTGCTGACAATTTTGAAGGTGTCTGCTTTCTTGAAAATGTGAGAGAAAATTCAAATAAACATGGGTTAGTACATCTTCAAAGTATCCTTCTTTGTAAGATACTAGGGAAGGAAGGGATCCAGATAGCAGGTGTTAGAGAAGGGGCTTCACAGATACGACATAGACTCCACCAAAAGAAAGTTCTTTTAGTTCTGGATGATGTTGATGAGTGTGAGCAGTTGACAGCTATTGCTGAAAAACCTGGTTGGTTTGGTCCTGGCAGCAGAATCATTATTACAACACGGGACAAACATTTGCTGACATTTCATGGCGTTGAAAGGACATATGAGGTACAAGGTTTAAATAAGGAAGAGTCCTTAGATTTGCTTATTTGGAAAGCTTTCAAAAGAGATATTGATGACCCAAGGTATACAAATGTTTTAACCCGTGCAGTAACTTATGCTTCTGGACTTCCATTGGCTTTGGAAGTTATAGGTTCTAATTTGTTTGGAAAAGGTATTGAAGAATGGGAATCTGCATTGGATCAATATGAAAAAATTCTTGATAATAAAATACGATATACACTAATGGAAGCTGCAAATATACTTCAAGCTCATTATGGGAGATGCATGAAATATCATATTGGAGTGTTGGTTGAAAAATCACTCGTAAAGATCGAAGGGACTGATAGAGTGACAATACATGATTTAACAGAGGACATGGGCAAAGAAATTGTTCTAGAAAAGTCAACAGAAATACCTGGAAATCGTAGTAGATTATGGTTTTATGAAGATATAGCAAAGGTCTTAGAAGACAATCAAGGGACTAGCACTATTGAAATGATATATTTAGAATTTCCCTTATTGGAAAGGAAAGTGATCAAATGGGATGGAAAAGCCTTTAAAGAGATGACAAATCTCAAAACGCTTATCATAAAAAATGGATGGTTTTCCAGCGCTCCCAAATATCTTCGAAACAGTTTAAGAGTATTGGAATGGTGGGAATATCCTTCAAAGGATTTTCCGTATGATTTTCAACCAAAGGAACTCTCCATACTCAAGTTGCCTCATAGTCTCTGTATGTCACCCATGTTGGATAGCTTAACTAAGGCAAGTGAGTTGGCCTCCTTGAATGTTTTGAATTTTGATTACAATGATTCATTGAGAGAGATACCCGATGTGTCTAGTCTTCAAAGTTTACAAGAATTATCTTTCAAAGAATGCAGCAATTTAATTAAAGTTCACAATTCAGTTGGTTTTCTACCAAAACTTAAAACATTGAATGCTTATGGTTGCTGCAAGCTCAGGAGTTTTCCAACTACAATGACACTGCCCTTATTGGAAGATCTTCGTCTTTCTTTTTGCTCAAGCCTTGAATATTTTCCAGAAATTCCAGAAGAGATGGAAAATCTTGATGGGCTTGAATTGCATTGCACAGACATAAAAGATTTGCCATGTTCATTTCGTAACCTTTCTAGGTTGGCGTATCTGGATATTATTGGGGACAAAATGTGTGAGATGCCAAGTGTCATTGGCATGATGCCACAACTGATTCGGTGTGAGATTGTGTTGGGAGGCAACGAGGGGAGGGTATCAGCAAAGCAGGAGAAGGGGCTTCATGGAATACTCACTCACTCTCTCCCCTCTTCAGATATGGAATATCTTCAACTCACAGACAGCAATTTGTCAGATGAGTTTTTTCCGCTAGCTGTTGAATGGTTTCCCGAAGTGGAAGTTTTATACCTAACAAACAATAATTTCACAGTCCTTCCTGAATGCATCCAACAATTTCGCTTTCAATGGTTTCTCAATGTGGATGGTTGCGAGCATCTTCGCGAGATTAGAGGGATTCCACCGTGCTTGATTCACTTCTCAGCAGTAGATTGCAAATCGTTGAGTTCGAGGGGCACAAACGTGTTACTCAATCAGGGAGTGCACGAGAATGGACCGTACCAAGTTTATTATACCAGGTGGAAGGATTTCAAAGTGGTTTGA 2706 0.3925 MDLQSPFSSTHSFNFDHAWKYDVFISFRGQDTRYGFTGNLCNALCRKGIHTFIDDEELQRGDEITPSLLSAIQESRIAIIVLSPNYASSSFCLDELVHILHCIKGKNRLVLPVFFEVDPCDVRHQRNSFGEAMAKHEKRFKDDLNKVQKWKEALHQVANLSGYHFKHGDGYEHMFIGNIVENISKRIKRHGALPVADHLVGLESPVSAVALLLDVESNTGVHMVGIYGIGGIGRTTLALVVYNLIADNFEGVCFLENVRENSNKHGLVHLQSILLCKILGKEGIQIAGVREGASQIRHRLHQKKVLLVLDDVDECEQLTAIAEKPGWFGPGSRIIITTRDKHLLTFHGVERTYEVQGLNKEESLDLLIWKAFKRDIDDPRYTNVLTRAVTYASGLPLALEVIGSNLFGKGIEEWESALDQYEKILDNKIRYTLMEAANILQAHYGRCMKYHIGVLVEKSLVKIEGTDRVTIHDLTEDMGKEIVLEKSTEIPGNRSRLWFYEDIAKVLEDNQGTSTIEMIYLEFPLLERKVIKWDGKAFKEMTNLKTLIIKNGWFSSAPKYLRNSLRVLEWWEYPSKDFPYDFQPKELSILKLPHSLCMSPMLDSLTKASELASLNVLNFDYNDSLREIPDVSSLQSLQELSFKECSNLIKVHNSVGFLPKLKTLNAYGCCKLRSFPTTMTLPLLEDLRLSFCSSLEYFPEIPEEMENLDGLELHCTDIKDLPCSFRNLSRLAYLDIIGDKMCEMPSVIGMMPQLIRCEIVLGGNEGRVSAKQEKGLHGILTHSLPSSDMEYLQLTDSNLSDEFFPLAVEWFPEVEVLYLTNNNFTVLPECIQQFRFQWFLNVDGCEHLREIRGIPPCLIHFSAVDCKSLSSRGTNVLLNQGVHENGPYQVYYTRWKDFKVV 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90629g00075 901 Gene3D - 15 188 IPR035897 -
Stsc90629g00075 901 Gene3D Ribonuclease Inhibitor 774 877 IPR032675 -
Stsc90629g00075 901 PRINTS Disease resistance protein signature 392 406 - -
Stsc90629g00075 901 PRINTS Disease resistance protein signature 299 313 - -
Stsc90629g00075 901 PRINTS Disease resistance protein signature 223 238 - -
Stsc90629g00075 901 PRINTS Disease resistance protein signature 632 648 - -
Stsc90629g00075 901 SUPERFAMILY "Winged helix" DNA-binding domain 429 508 IPR036390 -
Stsc90629g00075 901 Gene3D - 357 436 IPR042197 -
Stsc90629g00075 901 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
Stsc90629g00075 901 Pfam NB-ARC domain 204 442 IPR002182 GO:0043531
Stsc90629g00075 901 Pfam TIR domain 20 186 IPR000157 GO:0007165
Stsc90629g00075 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 449 IPR027417 -
Stsc90629g00075 901 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Stsc90629g00075 901 Gene3D Ribonuclease Inhibitor 526 680 IPR032675 -
Stsc90629g00075 901 Gene3D Ribonuclease Inhibitor 681 766 IPR032675 -
Stsc90629g00075 901 Gene3D - 189 352 IPR027417 -
Stsc90629g00075 901 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 852 IPR044974 GO:0006952
Stsc90629g00075 901 SUPERFAMILY L domain-like 531 871 - -
Stsc90629g00075 901 SMART till_3 20 160 IPR000157 GO:0007165
Stsc90629g00075 901 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 163 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90629g00075 Stsc-Chr90629 313712 316920 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90629g00075 15 736 WRKY Transcription Factor Family AT4G12020 29.712 1.30e-69 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90629g00075 - - aip:107644584 1216.45