Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90629g00031 ATGTCTTCTTCCGGCGGCGTCACCTCCGGCAACCCCCAGCAATACTTCTGCCACCAGTGCAACCGTACAGTCTCCATCCTCCCTTCTTCCTCCTCCGAGCTCCTCTGCCCTAACTGCAACGAAGGCTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAACCTCATCAATCCTTTCTTCTCCTTCAACTCTGACTTCGCCGGAGGCCCCTCCGCCGGAAACCTCCCCTTCTTATTCTCCGGTGCTGGCGACGATCTATCCACGCTGCTTGGCGGCGGCGGTGGCGTTGGTAACACCGCCGCAGCCGGCGAAGCCTTTAACCCCTTTGTGTTCCTCCAGAACTACCTCCAAACCCTAAGAGCTGGCGGTGCTAACGTCCAGTTCGTGATCGAGAACTCCGGCGACCCTACCACCGGAACGTTCCGGTTTCCCGGCGCTAACATGACTCACGGTGATTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCAGCTAGCGGAGAACGATCCGAATCGGTACGGTACACCGCCTGCATCGAAGTCAGCCGTACAGGGGCTGCCGGACGTGTCGGTGACGGAGGAGCTGCTGGAATCGGATTCTTCCCAGTGCGCGGTGTGTAAGGACACCTTCAAGCTTGGCGAATCGGTGAAGCAGATCCCTTGCAAGCACATATACCATTCCGATTGCATCTTGCCGTGGCTCGAACTGCATAATTCGTGCCCAGTTTGCCGTTATGAGTTGCCTACCGATGATCCGGATTATGAGCGGAGGGCTCAGCGTGGTGGAGTTCCTACGCCTGCCCCGGTGAACCGGTCTGTAGGGGCAGGCGGTTCAGCTGAATCCGCTGGAGGAAGTGGTGGTGGTGTTGGCGGCGACAATGATGGCGGCGATAATAGGCAAACGATGGAGAGGAGGGTGTTTAGGGTCTCTTTGCCGTGGCCGTTTAGGCAATTTGGTGGTTCTCCTGCGGAGACAAGCAATGTTGGGAACAACAACAGCAACAGTGGCGGCAACAACAACGGTGAAAATAACAGTGGCCAATCGAATTCCGAAAGTAGGGGGAATCGGAATTTTGAGTCGGAGACCAGACAAGAAGATCTTGATTGA 1113 0.5651 MSSSGGVTSGNPQQYFCHQCNRTVSILPSSSSELLCPNCNEGFLEELETPIPNPNLINPFFSFNSDFAGGPSAGNLPFLFSGAGDDLSTLLGGGGGVGNTAAAGEAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPTTGTFRFPGANMTHGDYFFGPGLEELIQQLAENDPNRYGTPPASKSAVQGLPDVSVTEELLESDSSQCAVCKDTFKLGESVKQIPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYERRAQRGGVPTPAPVNRSVGAGGSAESAGGSGGGVGGDNDGGDNRQTMERRVFRVSLPWPFRQFGGSPAETSNVGNNNSNSGGNNNGENNSGQSNSESRGNRNFESETRQEDLD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90629g00031 370 FunFam E3 ubiquitin-protein ligase RING1-like 166 252 - -
Stsc90629g00031 370 ProSiteProfiles Zinc finger RING-type profile. 205 246 IPR001841 -
Stsc90629g00031 370 SMART ring_2 205 245 IPR001841 -
Stsc90629g00031 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 106 250 - -
Stsc90629g00031 370 Pfam Zinc finger, C3HC4 type (RING finger) 204 245 - -
Stsc90629g00031 370 MobiDBLite consensus disorder prediction 256 301 - -
Stsc90629g00031 370 Pfam zinc-ribbon 13 47 IPR039525 GO:0061630
Stsc90629g00031 370 SUPERFAMILY RING/U-box 189 252 - -
Stsc90629g00031 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 252 IPR013083 -
Stsc90629g00031 370 MobiDBLite consensus disorder prediction 322 357 - -
Stsc90629g00031 370 MobiDBLite consensus disorder prediction 315 370 - -
Stsc90629g00031 370 CDD RING-H2_RNF126-like 204 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90629g00031 Stsc-Chr90629 135818 137415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90629g00031 163 259 C3H Transcription Factor Family AT5G15820 57.732 1.02e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90629g00031 K11982 - gmx:100784504 410.223