Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90629g00028 ATGGATGACGAAGAGCTTCAAAAAGGGAATGAAATCACATCCTCGCTTGTCAAGGCAATTAAAGAGTCCAGGATTTTCATTATTGTGCTCTCTGCTGATTATGCTTCTTCTTCTTTTTGCTTAGACGAACTCCTCCAGATCATAGACTGCGTTAAGCAAAAGGATCGGTTGGTTTTGCCAGTTTTTTATAATGTGGATCCTTGTGATGTGCGCTATCAAATAAACAGTTTCGCAAGACCAATGGCTAAGCACGAGGAGAGATTCAAAAATGACAATGTCAAAGTGCAGAAATGGAGGATGGCCTTAAAGCGAGTAGCTGATTTGTCCGGTTATCATCTCAAACAGGGGGATGGTCAATATGAACACAAATTTATTGAGGAGATTGTGGAAGACATTTCAAGAAAGATTGAACGCGAACCATTACCTGTTGCTGATCATCCAGTTGGACTAGATTCCGATATGTCGAATGTAATCTCACTTTTAGATATTGAGTCTAAGGATAGTGTTCATATCGTGGGGATTCATGGAATTGGTGGCATTGGAAAAACAACACTAGCTGTAGCAATTTATAACTCGATTGCTGACCATTTTCAGAATTTTTGTTTCCTTGAAGATGTGAAAGGAATTTCCAAAAGCCATGGGTTAGGGTATCTTCAAGAACTCCTCCTTTCTGAACTATTAGGAAAGGATCAAATTAAGTCAAGAGGTGTCCGTGATGCAACTACAAAGATACATCGTGCACTTGGACAAAAGAAGGTTCTTCTGGTTCTAGATAATGTTGATAGCGAGAATCAATTAGAAGCTATTGTTGGAAAGCTTGACTGGTTTTGTCCTGGTAGTAGAATTATTATTACCACACGGGATAAACAGCTATTAATATCTAATGGGGTTGAGAAAACTTATGAGGTAGAAGGTTTAAATCATGCAGATGCTCTTGAGTTGCTTATCTGGAAGGCTTTTAAAACCTCAAAGGTCGATTCAAGTTACACGGATGTTCTAAATCGTGTAGTAGCTTATGCTTGTGGACTTCCATTGGTGTTGCAAGTAATAGGCCCTGCCTTGCGCGGAAAAAGTGTACAAGAATGGAACTCTGCAATAAATCAATATGAAAGAATTCCTCATAATGAGATCCATGAGAAACTTAAAATAAGCTATGATGCTTTGCAGGAAGAAGAGAAGAGTGTTTTCCTTGACATTGCCTGTTGCTTCAAAGGATATGAATTGGCAGAGGTTGAAGATATTCTCCGTGCTCATCATGGAAGCTGTATGAAATATCATATTGGAGTGTTAGTTGAGAAATCTCTCGTTAAGATAAGTAGATATGGTAAGGTGACATTACATGATCTGATAGAGAAACTGGGAAAAGAAATTGTCCGACGAGAATCACCAAAACCTGAAAAGCGTAGCAGGTTGTGGTACTATGAAGATATAGTCAGAATCTTAAAACACAATCAAGGCACCGATGAAATTCAAATAATACATTTGAATTTCCCTTCATGTGAAGTGGAAGAAAGTGAAGATCCACTAGAAGAGAAGAATACAGCTTCAACAATAGAATGGAATGGAGAGGCTTTTACAAGAATGACAAAACTCAAAACACTTATTATAAAAAATGGTCATTTTTCTAAAAGTCCCGCATATCTTCCAAATAACTTAAGAGTATTGGAATGGTGCAGATATCCTTCAAATTATTTTTCATCTTCTGGTCTGAAAGAACTTTCCATACTCAAGTTACCAGATACTATTTTGTCACTGCAGTTGAATAGTTTATCTGAAACGATGATGAACTTGGTAGTTTTGAATTTCGACAACAGCAGATCTTTAGCACAAATACCTGATGTTACTGGCACTCCTAATTTGGAAATCTTGTCATTTAGAGGTTGTGCAAATTTAATTACTGTTCATCCTTCGGTTGGTTTTCTGAAGAAACTAAAAATCTTGAATGCTTCCTCTTGCCACAAGCTTATGCGTTTTCCACCTATCAGTTTGCCCTCTCTTCAAGTACTCGATCTTTCAGAATGCAGTCTTCTTGAGAATTTTCCAGAGATACAAGGAAAGATGGAAAATCTGAAAACACTTAGCTTTGAAGGCACTAAAATAAGTTTTGCATTTTTCTTTTCAAAACCTTTCTAA 2133 0.3727 MDDEELQKGNEITSSLVKAIKESRIFIIVLSADYASSSFCLDELLQIIDCVKQKDRLVLPVFYNVDPCDVRYQINSFARPMAKHEERFKNDNVKVQKWRMALKRVADLSGYHLKQGDGQYEHKFIEEIVEDISRKIEREPLPVADHPVGLDSDMSNVISLLDIESKDSVHIVGIHGIGGIGKTTLAVAIYNSIADHFQNFCFLEDVKGISKSHGLGYLQELLLSELLGKDQIKSRGVRDATTKIHRALGQKKVLLVLDNVDSENQLEAIVGKLDWFCPGSRIIITTRDKQLLISNGVEKTYEVEGLNHADALELLIWKAFKTSKVDSSYTDVLNRVVAYACGLPLVLQVIGPALRGKSVQEWNSAINQYERIPHNEIHEKLKISYDALQEEEKSVFLDIACCFKGYELAEVEDILRAHHGSCMKYHIGVLVEKSLVKISRYGKVTLHDLIEKLGKEIVRRESPKPEKRSRLWYYEDIVRILKHNQGTDEIQIIHLNFPSCEVEESEDPLEEKNTASTIEWNGEAFTRMTKLKTLIIKNGHFSKSPAYLPNNLRVLEWCRYPSNYFSSSGLKELSILKLPDTILSLQLNSLSETMMNLVVLNFDNSRSLAQIPDVTGTPNLEILSFRGCANLITVHPSVGFLKKLKILNASSCHKLMRFPPISLPSLQVLDLSECSLLENFPEIQGKMENLKTLSFEGTKISFAFFFSKPF 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90629g00028 710 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 111 IPR035897 -
Stsc90629g00028 710 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 684 IPR044974 GO:0006952
Stsc90629g00028 710 Gene3D - 305 395 IPR042197 -
Stsc90629g00028 710 Pfam NB-ARC domain 153 386 IPR002182 GO:0043531
Stsc90629g00028 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 399 IPR027417 -
Stsc90629g00028 710 PRINTS Disease resistance protein signature 661 677 - -
Stsc90629g00028 710 PRINTS Disease resistance protein signature 247 261 - -
Stsc90629g00028 710 PRINTS Disease resistance protein signature 171 186 - -
Stsc90629g00028 710 PRINTS Disease resistance protein signature 340 354 - -
Stsc90629g00028 710 Gene3D Ribonuclease Inhibitor 494 702 IPR032675 -
Stsc90629g00028 710 Gene3D - 1 137 IPR035897 -
Stsc90629g00028 710 ProSiteProfiles TIR domain profile. 1 136 IPR000157 GO:0007165
Stsc90629g00028 710 Pfam TIR domain 2 137 IPR000157 GO:0007165
Stsc90629g00028 710 SUPERFAMILY "Winged helix" DNA-binding domain 376 482 IPR036390 -
Stsc90629g00028 710 Gene3D - 138 300 IPR027417 -
Stsc90629g00028 710 SMART till_3 1 108 IPR000157 GO:0007165
Stsc90629g00028 710 SUPERFAMILY L domain-like 520 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90629g00028 Stsc-Chr90629 130491 133361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90629g00028 17 700 WRKY Transcription Factor Family AT4G12020 31.312 7.18e-71 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90629g00028 - - gmx:100780257 776.548