Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90629g00027 | ATGGATCTGCAATCTCCATTCTCCTCCTTTTCTTCTTCCTTCACATATAAATGGAAATATGATGTGTTTCTTAGTTTTAGAGGCCAAGACACTGGTCACAGTTTTACCAGAGATCTCTACAGAGCTCTATGTGATAAAGGAATCCTCCCCTTCTTTGATGATGATGAGTTTCAAAGAAAGGAAGTCAAACCAATTATTGAAGAGTCCAGAATTGCCATTGTTGTGCTCTCTCCAAACTATGCTGCTTCTTCTTCTTGCTTAGATGAGCTTGCCAATATCATTGACTGCATCAAGCGAAAGAATCGGTTGGTTTTGCCGATTTTCTATGATGTGGATCCTTCTGATGTGCGCCATCAAAGAAACAGTATTGCAATAGCAATGGCTGAGCATGAGGAAAGGCTTAAGGATAACATGGGCAAGGTGCATAAATGGAAAGAGGCTCTGCATCAAGTGGCTAATTTGTCAGGCTATCAGTTCAAACCCGGGAACGGATATGAATACATGTTTATTGAAGATATCGTTGAAAACATCTGGAAAAAGATTAGAATTGCACGGTTGCATATTGCTGATTACCCAGTTGGATTGGAGTCCCAAGTGTCAAAAGTAACTTCACTTCTGGAAATTGATTCTACTGATGAAGTTCACATGGTAGGGATATACGGAATTGGTGGGATAGGAAAATCAACACTTGCTCGTGCAATTTATAACTTGATTGCTGACTATTTTGAAGATGTGTGTTTTCTTCAAAATGTGAGAGAAACTTCTATTAGCCATGGTTTGGTACACCTTCAAAGCATCCTTCTTAATGATATAGTGGGAGACAGGAATATTAAGATAGCAAATGTGCATGAAGGAATTTCACAAATACGACAGAGGTTGTACAGAAGGAAAGTTCTTTTGATTCTAGATGATGTTGACCGTCGTGAGCAGTTACAATTTATTGCTGGAAAGCCTGATTGGTTTGGTCCTGGTAGCAGAGTCATTATCACAACACGGGACAAACATTTGCTAAGATATCATGATGTTGAGAAGAGATATGAGGTAAAGGGTTTAAATATGAAGGAGTCCATGGATTTGCTTACTTGGCATGCTTTTAAATCTGATACTGTTAGCCCAGGTTATAGTGACATTCTACGTCGTGCAGCAACTTATGCTCGTGGACTTCCATTGGCTTTGGAAGTAATAGGGTCTAACGTATATGTAGCAAGTTTAGAAGAATCCGAATCGATGATGGATAAATATGAGAGAATTCCAGATATAAATATCCAAAATGTACTTCAAATAAGTTTTGATGCTCTGGAGAAAGACGAGAAGAAAGTCTTTCTTGATATCAGTTGTTGCTTTAAAGGGTATAAGTTGATGGAAATTAAAGACATGCTTCTTGCTCGTTATGGAAGACACATGGACTATCATATCCGAATATTGGGTGATAAATCTCTCATACACATTAATCAGAACTATGAAGTGGGAATGCATGATTTGATAGAGCAAATGGGTAAAGAAATTGTTCGACAAGAACAACTTTCAAGCCCAGGAAAGCTGAGTAGATTATGGTTGTACGAAGATATAGTTCATGTTTTAGAAAATAATCAAGGTACGAGTGCAATTGAAATAATGCATTTGAAATTTCCACTGACTGAGGAAGAAGAAAATGAAGAGCCGCCAAGAATACAAAGGAATAAAGATTTTGAAGTGATATGGGATGGAGAAGCCTTTAGAAGGATGAAAAATATCGAAATACTTATCATAAAAAATGGTTGTTTTTCCACTCCTCCTAGCTATCTTCCAAATAGTTTAAGAGTACTGGAATGGTGGAAATATCCTTCAGAGTATCTTCCTGCTGGTTTTCATCCAAAGAAACTTTCCATACTCAAGTTACCCAAAAACATTTTGTCACTTCAACTGGATAGCTTTTCTAAGAAGTTTGTGGCCCTGAGAGTTTTAATCTTTGACTATAGTAAATCCTTAACAGAACTTCCAGATGTATCTGGTATTCCAAATTTACAAGAACTGTCACTTAGAGGTTGTGAGAACTTAATATCGGTGCATCCTTCAGTTGGTTTGTTGAATAAACTTGAAGTCTTGAATGCTTCTTCTTGCTACAATCTTAGAAGCCTTCCTCCCATCAATTTGCCCTCCCTTCAAATACTCCGACTTTCCGGATGCTGA | 2169 | 0.3771 | MDLQSPFSSFSSSFTYKWKYDVFLSFRGQDTGHSFTRDLYRALCDKGILPFFDDDEFQRKEVKPIIEESRIAIVVLSPNYAASSSCLDELANIIDCIKRKNRLVLPIFYDVDPSDVRHQRNSIAIAMAEHEERLKDNMGKVHKWKEALHQVANLSGYQFKPGNGYEYMFIEDIVENIWKKIRIARLHIADYPVGLESQVSKVTSLLEIDSTDEVHMVGIYGIGGIGKSTLARAIYNLIADYFEDVCFLQNVRETSISHGLVHLQSILLNDIVGDRNIKIANVHEGISQIRQRLYRRKVLLILDDVDRREQLQFIAGKPDWFGPGSRVIITTRDKHLLRYHDVEKRYEVKGLNMKESMDLLTWHAFKSDTVSPGYSDILRRAATYARGLPLALEVIGSNVYVASLEESESMMDKYERIPDINIQNVLQISFDALEKDEKKVFLDISCCFKGYKLMEIKDMLLARYGRHMDYHIRILGDKSLIHINQNYEVGMHDLIEQMGKEIVRQEQLSSPGKLSRLWLYEDIVHVLENNQGTSAIEIMHLKFPLTEEEENEEPPRIQRNKDFEVIWDGEAFRRMKNIEILIIKNGCFSTPPSYLPNSLRVLEWWKYPSEYLPAGFHPKKLSILKLPKNILSLQLDSFSKKFVALRVLIFDYSKSLTELPDVSGIPNLQELSLRGCENLISVHPSVGLLNKLEVLNASSCYNLRSLPPINLPSLQILRLSGC | 722 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90629g00027 | 722 | Gene3D | - | 183 | 345 | IPR027417 | - | |
| Stsc90629g00027 | 722 | Gene3D | - | 350 | 434 | IPR042197 | - | |
| Stsc90629g00027 | 722 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 16 | 183 | - | - | |
| Stsc90629g00027 | 722 | SUPERFAMILY | L domain-like | 564 | 722 | - | - | |
| Stsc90629g00027 | 722 | SUPERFAMILY | "Winged helix" DNA-binding domain | 422 | 528 | IPR036390 | - | |
| Stsc90629g00027 | 722 | Gene3D | - | 16 | 182 | IPR035897 | - | |
| Stsc90629g00027 | 722 | Pfam | NB-ARC domain | 197 | 401 | IPR002182 | GO:0043531 | |
| Stsc90629g00027 | 722 | SMART | till_3 | 19 | 154 | IPR000157 | GO:0007165 | |
| Stsc90629g00027 | 722 | ProSiteProfiles | TIR domain profile. | 18 | 185 | IPR000157 | GO:0007165 | |
| Stsc90629g00027 | 722 | Pfam | TIR domain | 19 | 180 | IPR000157 | GO:0007165 | |
| Stsc90629g00027 | 722 | PRINTS | Disease resistance protein signature | 385 | 399 | - | - | |
| Stsc90629g00027 | 722 | PRINTS | Disease resistance protein signature | 709 | 722 | - | - | |
| Stsc90629g00027 | 722 | PRINTS | Disease resistance protein signature | 292 | 306 | - | - | |
| Stsc90629g00027 | 722 | PRINTS | Disease resistance protein signature | 216 | 231 | - | - | |
| Stsc90629g00027 | 722 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 20 | 722 | IPR044974 | GO:0006952 | |
| Stsc90629g00027 | 722 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 9 | 157 | IPR035897 | - | |
| Stsc90629g00027 | 722 | Gene3D | Ribonuclease Inhibitor | 557 | 722 | IPR032675 | - | |
| Stsc90629g00027 | 722 | SMART | AAA_5 | 213 | 352 | IPR003593 | GO:0016887 | |
| Stsc90629g00027 | 722 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 183 | 444 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90629g00027 | Stsc-Chr90629 | 124302 | 127686 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90629g00027 | 5 | 722 | WRKY Transcription Factor Family | AT4G12020 | 29.759 | 8.17e-73 | 256 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90629g00027 | - | - | ahf:112751488 | 843.188 |