Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90629g00023 ATGGCTCTTCAATCTTCCATCTCCTCCTTATCCACCCATTCTTCTTCTTCTTCCTTCAGCTATGCATGGGAATATGATGTGTTTATTAGTTTCAGAGGCGAAGATACTCGCTACAGTTTCACTGGCAACCTCTACAAAGCTCTTTTTGACAAAGGAATCCGCACCTTCATTGATGATGAGGACCTTCCAAGAGGAGACCAAATCACGCCCTCACTTTTCACTGCAATTCAACAGTCAAGGACTGCCATTATTGTCCTCTCTCCTAACTATGCTTCTTCTTCTTTTTGCTTAGATGAGCTTGTCGAGATCCTTCACTGCATCAAGGGAAATAATCGGTTGGTTTTGCCAGTTTTCTATGAGGTTGACCCTTCTGATGTGCGCCATCAAAGAAATAGTTTTGGAGAAGCCATGGCTATGCATGAGGAGAGATTCAAGAATGATTTGAACAAGGTTCACAAATGGAAGCAGGCTCTTAATCAAGTAGCTAATTTGTCAGGCTACCATTTTAAACAAGGCGATGGATATGAACATAAGTTTATTAGAAACATTGTGGAGGTCATTTCAAGAAAGATTAGGCGTGTACCTTTGTTTGTTGCTGTTTTCCCAGTTGGACTAGATTCACTAGATTCTCGAGTGTCAGAAGTAATTTCACTTTTGAAAATGGATTCTAGTGACGAAGTTCACATGGTAGGGATACATGGAGTTGGTGGAATAGGAAAAACAACTCTTGCTTGTGCTGTTTATAACTTGATTGCTGACCATTTCGACGGAAAGGAGGAAGTTAAGATTGCGAGTGTTCAACAAGGAACTTCTCAAATCCAACGAAGGCTATGTCAAAAGAAAGTTCTTTTGATTTTAGACGATGTTGATGATCACAAGCAACTACATGCTATTGCTGGAAAACCTCACTGGTTTGGTCATGGAAGCAGAGTTATTATTACAACACGGGACACACATTTGCTAAAATGTCATGGTGTTGAAAACATGCATGAGGTAAAGGGTTTAAACGAGGCAGAGTCTTTTCAATTACTTATTAAACATGCTTTCAAGAATGGTTATGTTAGCAGCCCAAGTTACACAGATGTTTTGACCCGTACAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTGGAAGTAGTAGGTTGTCACTTGTGTGAAAAAAATGTAGAAGAATGGGAATCTGCATTGAGTAAATTTGAAAGACATCTTGATAATAAAATACATGAGATACTTCGAGTAAGTTTTGATGCTTTGGGAAAAGAAGAGCAGAGTGTTTTTCTTGATATTGCTTGTTGTTTTAAAGGTTATACATTAGTGGAAGTTACTGATATACTTCAAGCTCATTATGGGAGTTGCATGAAGTATCATATTGGAGTGTTGCTTGAAAAATCTCTCATAAGGATTAGTTTGTACGATTTAAGAGTGACAATGCATGATTTGATAGAGGACATGGGCAAAGAAATTGATGATCTAGAAAAATCACCGGAAATTCTTGGAAAACGTACTAGATTATGGTTCTATAAAGATATAGTTAAAGTTTTAGAAGATAATCAAGGGACTAGTGCTATTGAAATCATCTATCTGGAGTTTTCCTTACTTGAAAAGAAAGGAGATGAAGATTCATTGAAGAAAAAGAGAAATAAAGATGTAGAAGTGAAATGGGATGGAAAAGCTTTTGAAGATATGAAAAATCTTAAAACGCTTATTATAAAAAATGGGTATTTTTCCCAAAGTCCCAAATATCTTCCAAGCAGTTTAAGAGTATTGGAATGGTGGGGATATCCTTCAGAGGGGCTACCAAATAATTTTCAGCCACATGAACTTTCCATACTCAAGTTACCCAATAATCTTCACTTGTCACCCAAGTTGGATAGCTTATCCAAGAAGCTGGTGAGTTTGAAGGTTTTGAAATTTGATTACAATGATTCTCTGAAAGAAATAGCTGATGTGTCTGGTCTTCAAACTTTAGAAGAATTTTCGTTCCGAGGATGTAGAAATTTAGTTACAGTTCACAGTTCAGTTGGTTTTCTACCTAAACTTAAGAGATTGAATGCTGAACATTGCAACAAGCTCAGGACTTTTCCACCTGCTATCAAATTGCCCTTACTGAAAGATTTCAGTCTATCAGATTGCTCAAGCCTTGAGTATTTTCCAGAAATTCTAGAAGAGATGGCAAATGTAAGATGGCTTGATTTGAAGGGCACTGGCATAAAAGATTTGCCATGTTCATTTCGCAATCTTTCTGGATTGCGGAATCTGGAAATCATTTGGAATGAAATGTGTAAGATACCAAGTGTCATTTTTATGATGCCACAACTATCTTCTTGTTATATTGAGGGAGGAGGCAATAAGGGAAGAGTATCAGGAATGCAGGAAGAGGTGCTACAGGTTCAAGGCATACTCACTCACTCCCTCCCCTCTGAAAATGTGATGGAAGCTCTTTGTCTCAGAGACAACAATCTGTCAGATGATTTTTTTCCTCTAGCTGTTGTATGCTTGCCAAATGTGACAAAATTAAACCTGAGAGGCAACAATTTCACAGTCCTTCCTGAATGCATGCAAGAATTTCGCTTTCTAAGCTGGCTCAACGTGGATGATTGCAAGCATCTTCAGGAGATTAGAGGGATTCCACCAAACTTGAAAGAGTTCTCAGCAGTAAACTGCAAATCATTGAGTCCCAAGAGCACAAGACTTTTACTCAATCAGGAATTGCATGAAGGTAGATGGACAAACTTTGCCATGCCAGGTGAAAGGATTCCGAGGTGGTTTGAGAAGCGCAGGAATGGAGCTTCTATTTCTTTCTGGTTTCAAGGCACCATTTTCCCTGGCAATGCTCTTTGCTTTGCAATTCTACTCAAAGATGGCCTCCTTTCTCCAGTTGAAGTAATACCCATCCTGACTGTCAATGGCCACCGAGTTTCCTGTCGATGGCGGGAGACTGTAGTCGATCAATTATTTATTTTTGATCTGTCGCAGACAAATTCTTATAATGTAACACTACGTTTTGAAAACAAATGGAATTATGCAGAGGTTTCATATGAAGCACATCATGACTATACCTATGATGAGGTCCCTAGTGATTCAATTGCAAAAGAGATTGGAATGCACCTATTGAAGCAAAAGATCACTAGTAGTTTAATCGAAGATATTCGATTCACTGATCCTTACAAGATGACAGAACTAGTTATAATGATGATGATGCTCTCAATGGTATTTCCCAACCATAAGAAGCAGCCTTTGGTTCTGGAAACATGCATTGGTTTGTGGACATTGCTCTTTCTGACACACACTTTTTTTGGATAA 3303 0.3839 MALQSSISSLSTHSSSSSFSYAWEYDVFISFRGEDTRYSFTGNLYKALFDKGIRTFIDDEDLPRGDQITPSLFTAIQQSRTAIIVLSPNYASSSFCLDELVEILHCIKGNNRLVLPVFYEVDPSDVRHQRNSFGEAMAMHEERFKNDLNKVHKWKQALNQVANLSGYHFKQGDGYEHKFIRNIVEVISRKIRRVPLFVAVFPVGLDSLDSRVSEVISLLKMDSSDEVHMVGIHGVGGIGKTTLACAVYNLIADHFDGKEEVKIASVQQGTSQIQRRLCQKKVLLILDDVDDHKQLHAIAGKPHWFGHGSRVIITTRDTHLLKCHGVENMHEVKGLNEAESFQLLIKHAFKNGYVSSPSYTDVLTRTVTYASGLPLALEVVGCHLCEKNVEEWESALSKFERHLDNKIHEILRVSFDALGKEEQSVFLDIACCFKGYTLVEVTDILQAHYGSCMKYHIGVLLEKSLIRISLYDLRVTMHDLIEDMGKEIDDLEKSPEILGKRTRLWFYKDIVKVLEDNQGTSAIEIIYLEFSLLEKKGDEDSLKKKRNKDVEVKWDGKAFEDMKNLKTLIIKNGYFSQSPKYLPSSLRVLEWWGYPSEGLPNNFQPHELSILKLPNNLHLSPKLDSLSKKLVSLKVLKFDYNDSLKEIADVSGLQTLEEFSFRGCRNLVTVHSSVGFLPKLKRLNAEHCNKLRTFPPAIKLPLLKDFSLSDCSSLEYFPEILEEMANVRWLDLKGTGIKDLPCSFRNLSGLRNLEIIWNEMCKIPSVIFMMPQLSSCYIEGGGNKGRVSGMQEEVLQVQGILTHSLPSENVMEALCLRDNNLSDDFFPLAVVCLPNVTKLNLRGNNFTVLPECMQEFRFLSWLNVDDCKHLQEIRGIPPNLKEFSAVNCKSLSPKSTRLLLNQELHEGRWTNFAMPGERIPRWFEKRRNGASISFWFQGTIFPGNALCFAILLKDGLLSPVEVIPILTVNGHRVSCRWRETVVDQLFIFDLSQTNSYNVTLRFENKWNYAEVSYEAHHDYTYDEVPSDSIAKEIGMHLLKQKITSSLIEDIRFTDPYKMTELVIMMMMLSMVFPNHKKQPLVLETCIGLWTLLFLTHTFFG 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90629g00023 1100 Gene3D Ribonuclease Inhibitor 720 904 IPR032675 -
Stsc90629g00023 1100 Pfam NB-ARC domain 267 408 IPR002182 GO:0043531
Stsc90629g00023 1100 SUPERFAMILY L domain-like 554 892 - -
Stsc90629g00023 1100 Gene3D - 204 260 IPR027417 -
Stsc90629g00023 1100 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 167 IPR035897 -
Stsc90629g00023 1100 SMART till_3 24 164 IPR000157 GO:0007165
Stsc90629g00023 1100 SUPERFAMILY "Winged helix" DNA-binding domain 405 515 IPR036390 -
Stsc90629g00023 1100 Gene3D - 261 330 IPR027417 -
Stsc90629g00023 1100 Gene3D Ribonuclease Inhibitor 545 719 IPR032675 -
Stsc90629g00023 1100 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 193 - -
Stsc90629g00023 1100 PRINTS Disease resistance protein signature 229 244 - -
Stsc90629g00023 1100 PRINTS Disease resistance protein signature 698 714 - -
Stsc90629g00023 1100 PRINTS Disease resistance protein signature 370 384 - -
Stsc90629g00023 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 429 IPR027417 -
Stsc90629g00023 1100 ProSiteProfiles TIR domain profile. 23 187 IPR000157 GO:0007165
Stsc90629g00023 1100 Gene3D - 19 197 IPR035897 -
Stsc90629g00023 1100 Pfam TIR domain 25 190 IPR000157 GO:0007165
Stsc90629g00023 1100 Coils Coil 389 409 - -
Stsc90629g00023 1100 Gene3D - 334 419 IPR042197 -
Stsc90629g00023 1100 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 876 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90629g00023 Stsc-Chr90629 111799 115726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90629g00023 19 780 WRKY Transcription Factor Family AT4G12020 29.630 4.07e-66 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90629g00023 - - aip:107644584 1725.29