Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90629g00021 ATGATTGGTGCTGGATCAACTAGCTTGTCTTCTTCCTCTTCTTCCTTTACCTGTGGATGGACCTATGACGTCTTCATCAGTTTCAGGGGCCCCGATACCCGCCATGGCTTCACCGGTCATCTCTACAGTGCACTCTCTCACAGGGGAATCCGCACCTTCATTGATGATCAGGACCTTCAAAGAGGCCACGTCATCACTCCCTCTCTTCTCAACGCAATCCAAGAATCCAGGATTGCTATCATTGTCTTCTCTCCGAACTTTGCATCTTCCTCTTTCTGCTTGGATGAACTTGCCACCATCATGGACTCTCTCAACTCCAACGCTAGGTTGGTTTTGCCTGTTTTCTATGGCGTGGATCCTAGTGATGTGAGGCATCAGAGAGGGACTTATGCTGAAGCTCTTGCTAGGCATGAGGAAAGGTTCAAGGATAATTTGGACATTGTGCTTAATTGGAGGAATGCTCTTCATCAAGCAGCTAACTTGTCCGGTTGGCACTTCAAACAAGGGGATGGATATGAGTACAAGTTTATTGAAGAGATTGTGGAAGCCGTCTCGAGAAATGTTAGACGAGGTGTTTTGCCTGTTGCTGATTACCCGGTTGGACTCGAGTCCAAGGTGGTACAAGTAAATTCCCTTCTGGAGGTTGGGTGTAATGATGGAGTCCTTATGGTTGGGATCCATGGAATTGGTGGAATAGGTAAAACCACACTTGCTCTAGCTCTATATAACTGCATTGCAGATCATTTTGAAGGCTTGTGTTTTCTTGAAAGTGTGAGAGAAAATTCAAGTAAACATGGACTGCTACATCTTCAGAATATCCTTCTTTCAGAATTATTAGGTGAGAATAAGTTTCAAGCAACCAGTGTACAACAAGGAATATCAATTATACAGCATAGGCTCCAGAGAAAGAAGATACTTCTGATTTTAGATGATGTCGACAGACAGGAGCAATTGCAAGCTCTTGCTGGAAATCCTGTCTGGTTTGGTCCTGGCAGCAGAGTCATCATTACGACGCGGGACACACATTTGCTGGCATGTCATGGGGTTGAAAGATCATACGAGTTGGAGGGTCTAAATTATGCAGATGCTGTTGAATTGCTTAGTTGGAAGGCTTTTAAAACCGTTAAAGTCAGTCCAAGTTACACTGATGTTTTGAACCGTGCAGTAACTTATGCTCATGGGCTTCCATTGGCTTTGGAAGTAATAGCTTCCAACATGTTTGGAAAAAGTATTGGGGAATGGAGATCTGCAATAAATCAATATGAAAGAATTCCTAATAATAAGATCCTTGAGATACTTAAAGTAAGTTTTGATGCTTTAGAGGAAGAAGAGCAGAGTGTTTTTCTGGACATTGCTTGTTGTTTCAGAGGATATCCATTAGCAGAAGTTGAAGATATACTTCATGCTCATCATGGTGCCTGTATGAAATATCATATTGGTGTTTTGGTTGAAAAATCTCTCATAAAGATTGGATGGCGTGGTATGATCACATTACATGATCTAATAGAACACATGGGTAAAGAACTTGTCCGACAGGAGTCACCAAAAGTTCTTGGGAAACGTAGCAGGTTATGGTGGCATGAAGATATAGTTCAAGTTTTGGAAGACAATCAAGGAACTAGTGAAATAGAAATCATTCATCTGAATTTCCCCTCATCTGAGGATGAAGAAGAAGCAAAAGTAGAATGGGATGGCAAGGCCTTGAAGAAGATGAAAAATCTCAAAACGCTCATTATAAAAAATGGCCATTTTTCTGAAGGTCCCAGACATTTTCCAAATAGTTTAAGAGTTCTAGAATGGTGGGGATATCCTTCTGAATGCTTACCATCTAATTTTCATCCAAAGCAACTTTCCATATTCAAGTTACCGTATAATTGCTTCTTATCACTCTATTTGGCTAGCTTATTGAAGGCAAGGAAGTTTGCAACCATAAAAGTTCTGAATTTTGACTACAATAAATATCTAACACAGCTGCCTGATGTATCCGATCTTCCAAATTTACAAAAGTTGTCATTTGAGTACTGTGACAATTTAATTTCAGTCCACACTTCAGTTGGTCTCCTTGAGAAACTTAAAAGTTTGAGTGCTTATTCTTGCCGTAAGCTTACTAGTTTTCCATGCATCAACTTGCCTTCTCTTGAAGAACTCAAACTTTCAGGATGCTCAAGTCTTGAGAATTTTCCCGAAATACTGGAAAAGATGGAAAATATAACGCAACTTGAATTGGAGCACACTGGAATAAAAGCTTTGCCATCTTCGTTTCAGAAGTTTTCTCGGCTGCAGCGGTTGATTTTGATTGAAAATAAATATTGTAAGATACCAAGTGCCATTGTCATGATGCCTGAACTGGTCAGGATTGTAGTCACGCCACGCAAGAAGGATCAGCTATCAATAAAACAAGACGAGGGTGAAGAAACAATGAGCTCAATGGTGTCTTCAAATGTAGAATATCTAAATATCTCGCGCTGCAAGCTGTCGGATGATTTCTTCCCTCTAGGTCTTGCATGGTTTGCTAATGTGAAAGAATTAGACCTAGGATGCAATGATTTCACAATTCTTCCTGAATGCATCAAAGAATGTCACTTTCTGTGGAAGCTTATTGTGGACTATTGCCCAAATCTTCAGGAAATTAGAGGGATTCCACCAAATTTGAAGCACTTCTCAGCAATAGGCTGCAAATCCTGGACTTCTTCATGCTCGAGCATGTTACTGAATCAGGAACTGCATGAGGCCGGAAACACCAGGTTTGCTTTGCCTGGGTCACGAATCCCAGCATGGTTTGAGCACCCCAGCAAGGGAGCATCAATTTCTTTCTGGTTTCGTAAGAAGTTCCCTGCCATAGCTCTCTCTCTCGCAATTGAACTGAAGGATAAGGACACAGTTTTTATAAGCCCCAACGTGACCATCAATGGCAAGAAATGTTTTCCTGACTTCTGGACTGAAATGGAACAGATTTTCCTCCTTGATCTACAGATGATAGAATGTAACTTGGGTGAGGGTGAGACACTTTCAGAAAATGAATGGAATCATGCAGAGATTTCTTGCACGACTAGAGATCATTTTCTTTTTATCAGAGAAAATTTCCCAGTCGAGCCGTTTGCAAAAGAAATCGGAATCCATGTATTCAGGGAAAAAAGTGCCATGGAGGATATTCGATTCACCTATCCTTATAAAAGAAGAAAATTAGATGAAGGTCTCTGTAGTTTAGATCCTTGA 3216 0.4086 MIGAGSTSLSSSSSSFTCGWTYDVFISFRGPDTRHGFTGHLYSALSHRGIRTFIDDQDLQRGHVITPSLLNAIQESRIAIIVFSPNFASSSFCLDELATIMDSLNSNARLVLPVFYGVDPSDVRHQRGTYAEALARHEERFKDNLDIVLNWRNALHQAANLSGWHFKQGDGYEYKFIEEIVEAVSRNVRRGVLPVADYPVGLESKVVQVNSLLEVGCNDGVLMVGIHGIGGIGKTTLALALYNCIADHFEGLCFLESVRENSSKHGLLHLQNILLSELLGENKFQATSVQQGISIIQHRLQRKKILLILDDVDRQEQLQALAGNPVWFGPGSRVIITTRDTHLLACHGVERSYELEGLNYADAVELLSWKAFKTVKVSPSYTDVLNRAVTYAHGLPLALEVIASNMFGKSIGEWRSAINQYERIPNNKILEILKVSFDALEEEEQSVFLDIACCFRGYPLAEVEDILHAHHGACMKYHIGVLVEKSLIKIGWRGMITLHDLIEHMGKELVRQESPKVLGKRSRLWWHEDIVQVLEDNQGTSEIEIIHLNFPSSEDEEEAKVEWDGKALKKMKNLKTLIIKNGHFSEGPRHFPNSLRVLEWWGYPSECLPSNFHPKQLSIFKLPYNCFLSLYLASLLKARKFATIKVLNFDYNKYLTQLPDVSDLPNLQKLSFEYCDNLISVHTSVGLLEKLKSLSAYSCRKLTSFPCINLPSLEELKLSGCSSLENFPEILEKMENITQLELEHTGIKALPSSFQKFSRLQRLILIENKYCKIPSAIVMMPELVRIVVTPRKKDQLSIKQDEGEETMSSMVSSNVEYLNISRCKLSDDFFPLGLAWFANVKELDLGCNDFTILPECIKECHFLWKLIVDYCPNLQEIRGIPPNLKHFSAIGCKSWTSSCSSMLLNQELHEAGNTRFALPGSRIPAWFEHPSKGASISFWFRKKFPAIALSLAIELKDKDTVFISPNVTINGKKCFPDFWTEMEQIFLLDLQMIECNLGEGETLSENEWNHAEISCTTRDHFLFIRENFPVEPFAKEIGIHVFREKSAMEDIRFTYPYKRRKLDEGLCSLDP 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90629g00021 1071 Gene3D Ribonuclease Inhibitor 724 915 IPR032675 -
Stsc90629g00021 1071 PRINTS Disease resistance protein signature 223 238 - -
Stsc90629g00021 1071 PRINTS Disease resistance protein signature 392 406 - -
Stsc90629g00021 1071 PRINTS Disease resistance protein signature 299 313 - -
Stsc90629g00021 1071 PRINTS Disease resistance protein signature 708 724 - -
Stsc90629g00021 1071 Gene3D - 191 352 IPR027417 -
Stsc90629g00021 1071 SMART till_3 21 161 IPR000157 GO:0007165
Stsc90629g00021 1071 Pfam TIR domain 22 187 IPR000157 GO:0007165
Stsc90629g00021 1071 Gene3D Ribonuclease Inhibitor 560 723 IPR032675 -
Stsc90629g00021 1071 Gene3D - 357 441 IPR042197 -
Stsc90629g00021 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 451 IPR027417 -
Stsc90629g00021 1071 SUPERFAMILY L domain-like 515 907 - -
Stsc90629g00021 1071 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 877 IPR044974 GO:0006952
Stsc90629g00021 1071 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 190 - -
Stsc90629g00021 1071 Pfam NB-ARC domain 206 424 IPR002182 GO:0043531
Stsc90629g00021 1071 ProSiteProfiles TIR domain profile. 20 188 IPR000157 GO:0007165
Stsc90629g00021 1071 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Stsc90629g00021 1071 Gene3D - 17 190 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90629g00021 Stsc-Chr90629 96915 100616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90629g00021 16 783 WRKY Transcription Factor Family AT4G12020 29.494 6.45e-76 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90629g00021 - - gmx:100780257 1252.65