Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90629g00019 ATGGCTCTGCAATCCTCCTCTGCCCAACCTTTTTCATCTTGTTCCATCAGATATGAATGGAAATATGATGTGTTTCTTAGTTTCAGAGGCCTAGATACTCGCTTAGGTTTCACTGGCAACCTCTACAATGCACTCCATAACAAAGGAATCCACACTTTCTTTGATGGTGACATGCTTCAAAGTGGAGAGGAAATCACACCTGCACTTCTCAACGCAATTCAAAGCTCCAGGATTGCCATTATTGTGCTCTCTCCTAAATATGCTGATTCTTCCTTTTGCTTAAAGGAACTAGTCCATATCCTTGACTGCATCAAGGGAAACAGTCGCTTGGTTTTGCCAGTTTTCTATGAGGTGGATCCTTCTGATGTGCGCCGTCTTAAAAACAGTTTTGGTGAGGCAATGGCTAAGCATAAGACCAGATCCCAGATTCATGTGGACAAATGGGAGAACGCTCTCAAACAAGTAGCCAATTTGTCAGGCTATCATTTCAAACATGGGGAAGGATATGAACATAAGTTTATTGAAAAGATCGTGCAAGACATTTCAAGAAAGATAAGGCGTGTACCTTTGTCAGTGGCTGACTACCCTGTTGGACTTGAGTCTCCTGTGTCAGAAGTTATTTCACTTTTGGAAATGGATTCTATTGATCAAGTTCACATGGTAGGGATACATGGAATTGGTGGCATAGGTAAATCCACACTTGCTCTTGCAACTTATAACTTGATTGCTGACAATTTTGAAGCTGTGTGCTTTCTTGAAAACATTAGAGAAAATTCGCAAAAACATGGGTTGGTGCATCTTCAAAAACATCTTCTTTGTAAGATATTAGGGAAGAAGGGAGTCCACATAATTGGTGTTAACGAAGGTACTTCACAGATACAACGTAGACTCAACCAATTGAAAGTTCTTTTGGTTCTGGATGACGTTGATGATTCCAATCAGCTACATGCTATTGCTGGAGAGCCTGATTGGTTTGGTGGTGGTAGCAGAATCATAATTACAACACGAGACACACATTTGCTAGAACTTCATGGTGTTGAAAGGACATATGAGGTTGAAGGTTTAAAGGGGGAAGAGTCCTTTGAGTTGCTTATTTGGAAAGCTTTTAAAACTAATACTGATAGCCCACCAAGTTATGCAGAGGTTTTAAATCGTGCAATAAGTTATGCCTCTGGACATCCACTGGCTTTGGAAATAATAGGCTCCAACTTGTTTGGAAAAGAAGTAGAAATTTGGGAATCTGCATTGAATCAATTTGAGAAACATCTTGATGATAAAATACATAACATACTTCAAGTAAGTTTTGATGGTTTGGGACAAGAAGAGAAAAGTGTTTTTCTTGATATTGCCTGTTGTTTTAAAGGATACACATTAGTGGAAATTACTGATCTGCTTCAAGCTCACTATGGGCATTCCATGAAATATCATATTCAAGTGTTGTTTGAAAAATCTCTCATAAAGATCAATCTGTACAATGTGGTGATAATGCATGACTTGATAGAGCACATGGGCAAAGAAATTGATGATCTTGAAAAATCAGCAGAAATGCCTGGAAAGCGAAGAAGATTATGGTTCTATAAAGATATAGTTAAAGTTTTAGAAGACAATCAAGGGACTAATGCAATTGAAATCATATATCTGGAATTTCCCTCATTTGAAAAGAAAGGAGATGAAGATCCATTTAAAAAAGATGGAAATAAAGATGTAGAAGTGACATGGGATGGAACAGCTTTTAAAGACATGAAAAACCTCAAAACAGTTATCATAAAAAATGGTTGTTTTTCCAAAAGTCCCAAACATCTTCCAAACAGTTTAAGAGTGTTGGAATGGCGGAAGTATCCTTCAGAGTATTTTCCACGTGATTTTCAACCAGAGATGCTATGCATACTCAAGTTACCCGAATATCTCTACCCATCAACCAAGTTGGATTGCTTGTCCAAGGCAAGTGTTCTAAATTCCTTTTTATGA 1968 0.3801 MALQSSSAQPFSSCSIRYEWKYDVFLSFRGLDTRLGFTGNLYNALHNKGIHTFFDGDMLQSGEEITPALLNAIQSSRIAIIVLSPKYADSSFCLKELVHILDCIKGNSRLVLPVFYEVDPSDVRRLKNSFGEAMAKHKTRSQIHVDKWENALKQVANLSGYHFKHGEGYEHKFIEKIVQDISRKIRRVPLSVADYPVGLESPVSEVISLLEMDSIDQVHMVGIHGIGGIGKSTLALATYNLIADNFEAVCFLENIRENSQKHGLVHLQKHLLCKILGKKGVHIIGVNEGTSQIQRRLNQLKVLLVLDDVDDSNQLHAIAGEPDWFGGGSRIIITTRDTHLLELHGVERTYEVEGLKGEESFELLIWKAFKTNTDSPPSYAEVLNRAISYASGHPLALEIIGSNLFGKEVEIWESALNQFEKHLDDKIHNILQVSFDGLGQEEKSVFLDIACCFKGYTLVEITDLLQAHYGHSMKYHIQVLFEKSLIKINLYNVVIMHDLIEHMGKEIDDLEKSAEMPGKRRRLWFYKDIVKVLEDNQGTNAIEIIYLEFPSFEKKGDEDPFKKDGNKDVEVTWDGTAFKDMKNLKTVIIKNGCFSKSPKHLPNSLRVLEWRKYPSEYFPRDFQPEMLCILKLPEYLYPSTKLDCLSKASVLNSFL 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90629g00019 655 Gene3D - 188 349 IPR027417 -
Stsc90629g00019 655 SMART till_3 21 158 IPR000157 GO:0007165
Stsc90629g00019 655 Gene3D - 16 187 IPR035897 -
Stsc90629g00019 655 PRINTS Disease resistance protein signature 296 310 - -
Stsc90629g00019 655 PRINTS Disease resistance protein signature 220 235 - -
Stsc90629g00019 655 PRINTS Disease resistance protein signature 390 404 - -
Stsc90629g00019 655 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 161 IPR035897 -
Stsc90629g00019 655 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 634 IPR044974 GO:0006952
Stsc90629g00019 655 Pfam NB-ARC domain 201 427 IPR002182 GO:0043531
Stsc90629g00019 655 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 187 - -
Stsc90629g00019 655 Pfam TIR domain 21 186 IPR000157 GO:0007165
Stsc90629g00019 655 SUPERFAMILY "Winged helix" DNA-binding domain 425 534 IPR036390 -
Stsc90629g00019 655 ProSiteProfiles TIR domain profile. 20 185 IPR000157 GO:0007165
Stsc90629g00019 655 Gene3D - 354 439 IPR042197 -
Stsc90629g00019 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90629g00019 Stsc-Chr90629 86082 88387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90629g00019 22 633 WRKY Transcription Factor Family AT4G12020 29.440 7.31e-57 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90629g00019 - - aip:107644584 872.463