Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90629g00015 ATGGCTCTGCCATCCTTCTCCTCCTCCGCCCATCCATTTTCCTCTTCTTCAATCAGATATAAATGGAAATATGATGTGTTTATTAGTTTCAGAGGCCTAGATACTCGCTTTGGTTTCACTGGCAACCTCTACAGAGCTCTTTGTGACAAAGGAATTCACAGCTTCTTTGATGATGGTGAGCTTCAAAGTGGAGACGAAATCGAACCTGCGCTTCTCAAGGCAATTCAAGACTCCAGGATTGCCATCATCGTGCTCTCTGCTAACTATGCTCATTCTTCTTTTTGCTTAATCGAGCTTCTCAACATCCTTCACTTCATCAAGGGAAACAATCGCTTGGTTTTGCCCATTTTCTTTAAGCTTGATCCTTCTGATGTTCGCCATCTAAAAAACAGTTTCGGTGAGGCCATGGCTAAGCATGAGAAGAGATACGAGAATGATGTGAATAAGGTGCAAAAATGGAAGCAGGCTCTGCTACAAGTGGCTAATTTCTCGGGCTATCATTTCAAACATAAGGATGGATATGAACATAAGTTTATTAGAAATATCGTGGAAGACGTTTCAAGAAAGATTAGGCGTGTACCTTTGCCTGTTGCTGATTACCCTGTTGGACTAGATTCTCGAGTGTCAAAAGTAATTTCACTTTTGCAAATGGATTCTAGTAATCAAGTTCACATGGTAGGGATACATGGAATTGGGGGAATTGGAAAGACAACTCTTGCTAGTGCAGTTTATAACTTGATTGCTGACCATTTTGAAGATGTGTGCTTTCTTGAAGACGTGAGAGAAAAGTCAAAGAAATATGGGTTGGTACATGTTCAAAATATCCTTCTTTGTAAGATATTGGGGAAGGAAGGAGTTCAGATAGAAGGTGTTAAAGAAGGAATCTCACAAATACAGCGAAGGCTTTGTCGAAAGAAGGTCCTTTTGGTTCTCGATGACGTTGATAATCGCGAGCAGCTGGAGGCTATTGCTGGAAAACTTGAATGGTTTGGTTGGGGAAGCAGAGTTATTATCACAACACGTGATACACATTTGCTAAAATGTCATGGTGTTGGAAAAACATATGAGGTACGGGGCTTAGATAAGAAAGAGTCTTTTCAATTATTTATTCACAATGCTTTTAAGAATGATAAAGTTAGCCTCCCAAGATACACAGATGTTTTAAACCGTGCTGTAACTTATGCTTCTGGACATCCACTGGCTTTGGAAATAATAGGCTCCAACTTGTTTCGAAAAGAAGTACAAGTTTGGAAATCTGCATTGGATCATTTTGAAAAACACCTTGATAATAAAGTATATGAGATACTCAAAGTGAGTTTTGAGGCTTTGGGAAAACAAGAGCAGAGTGTTTTTCTTGATATTGCCTGTTGTTTTAAAGGATATAAATTAGGGGAACTTACTGATATTCTTCAAGCTCATTATGGGAGTTGCATGACATATCATACGGAAGTGTTGATTGAAAAATCTCTCATAAAGATCGAAGGGCCGAATAACAGGGTGACAATGCATGATTTGATAGAGAATATGGGCAAAGAAATTTTTCTAAAAGGATCACCAGAAATGCCTGGAATGCGTAGTAGGTTATGGCTCTGCGAAGATATAGTAAAAGTCTTAGAAAATAATCAAGGAACTTGTGCCGTTGAAATCATATATCTAGAATTTCCCTTACTTGAAGTGGAAGATGATGAAGATCTTTTGAAAAAAGAGAAAAATAAAGATGTAGAAGTGAAATGGGATGGAAAAGCTTTTAAGGATATGAAAAATCTGAAAACACTTATCATAAAAATGGTTGTTTTTCTGAAAGTCCCAAACATCTTCCAAATAGTTTAA 1830 0.3792 MALPSFSSSAHPFSSSSIRYKWKYDVFISFRGLDTRFGFTGNLYRALCDKGIHSFFDDGELQSGDEIEPALLKAIQDSRIAIIVLSANYAHSSFCLIELLNILHFIKGNNRLVLPIFFKLDPSDVRHLKNSFGEAMAKHEKRYENDVNKVQKWKQALLQVANFSGYHFKHKDGYEHKFIRNIVEDVSRKIRRVPLPVADYPVGLDSRVSKVISLLQMDSSNQVHMVGIHGIGGIGKTTLASAVYNLIADHFEDVCFLEDVREKSKKYGLVHVQNILLCKILGKEGVQIEGVKEGISQIQRRLCRKKVLLVLDDVDNREQLEAIAGKLEWFGWGSRVIITTRDTHLLKCHGVGKTYEVRGLDKKESFQLFIHNAFKNDKVSLPRYTDVLNRAVTYASGHPLALEIIGSNLFRKEVQVWKSALDHFEKHLDNKVYEILKVSFEALGKQEQSVFLDIACCFKGYKLGELTDILQAHYGSCMTYHTEVLIEKSLIKIEGPNNRVTMHDLIENMGKEIFLKGSPEMPGMRSRLWLCEDIVKVLENNQGTCAVEIIYLEFPLLEVEDDEDLLKKEKNKDVEVKWDGKAFKDMKNLKTLIIKMVVFLKVPNIFQIV 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90629g00015 609 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 595 IPR044974 GO:0006952
Stsc90629g00015 609 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 192 - -
Stsc90629g00015 609 Gene3D - 359 444 IPR042197 -
Stsc90629g00015 609 SUPERFAMILY "Winged helix" DNA-binding domain 430 539 IPR036390 -
Stsc90629g00015 609 Coils Coil 136 156 - -
Stsc90629g00015 609 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 166 IPR035897 -
Stsc90629g00015 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 454 IPR027417 -
Stsc90629g00015 609 Gene3D - 20 186 IPR035897 -
Stsc90629g00015 609 SMART till_3 23 163 IPR000157 GO:0007165
Stsc90629g00015 609 ProSiteProfiles TIR domain profile. 22 190 IPR000157 GO:0007165
Stsc90629g00015 609 Gene3D - 187 354 IPR027417 -
Stsc90629g00015 609 Pfam NB-ARC domain 206 440 IPR002182 GO:0043531
Stsc90629g00015 609 Pfam TIR domain 23 189 IPR000157 GO:0007165
Stsc90629g00015 609 PRINTS Disease resistance protein signature 225 240 - -
Stsc90629g00015 609 PRINTS Disease resistance protein signature 584 600 - -
Stsc90629g00015 609 PRINTS Disease resistance protein signature 301 315 - -
Stsc90629g00015 609 PRINTS Disease resistance protein signature 395 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90629g00015 Stsc-Chr90629 77449 79467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90629g00015 13 571 WRKY Transcription Factor Family AT4G12020 29.982 7.60e-49 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90629g00015 - - aip:107644584 797.349