Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00060 ATGAAGGACGACTTGAAGAATAATACTGAAAATATTAATATTAATAATAATAATGAGTGTTCATCAACAACTCTCATTAACACTTGTCCCAATCCAATTAGCAACAAGAGATGCTATGTAGCCTCTATCTGCAGCTTTGGTTCAGATGGCAGTGCAAGAGGAATGCTCGGTGGTCCCCGCTGCCGCCGTTGTCAGCAAGAAAGAGGAGTGCTTCTGCAGAGTGATGGTTCCAATAGATACTGCACAAATTATTATTGCAGGACAACAAGAACTCCAATGTGGCGCAAGGGCCCTCTCGGATATAAGACTTTGTGCAATGCATGTGGGATTGATTACATGAAGCAGGTGACAAGTAGAGGGAGTGAGATCACTACTACACTCCCAGATTTTGCTGCAGAATTAAGATCAGATCATTCAAAATCAGAATGCTCTGCAGATGTTTAA 444 0.4167 MKDDLKNNTENININNNNECSSTTLINTCPNPISNKRCYVASICSFGSDGSARGMLGGPRCRRCQQERGVLLQSDGSNRYCTNYYCRTTRTPMWRKGPLGYKTLCNACGIDYMKQVTSRGSEITTTLPDFAAELRSDHSKSECSADV 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00060 147 ProSiteProfiles GATA-type zinc finger domain profile. 86 119 IPR000679 GO:0006355|GO:0043565
Stsc90628g00060 147 PANTHER OS01G0976800 PROTEIN 15 117 - -
Stsc90628g00060 147 Gene3D - 76 141 IPR013088 GO:0006355|GO:0008270
Stsc90628g00060 147 Pfam GATA zinc finger 86 114 IPR000679 GO:0006355|GO:0043565
Stsc90628g00060 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 73 126 - -
Stsc90628g00060 147 SMART GATA_3 75 129 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00060 Stsc-Chr90628 327642 328583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00060 79 115 C2C2-Gata Transcription Factor Family AT3G20750 59.459 1.41e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc90628g00060 GATA 7e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00060 - - adu:110276499 180.644