Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00055 ATGGATGTGGCATCAACCATCCCTTATGAGGCACTTTCTTACTTCTTTACCGGCAAACACACTGTCTCCCTCCCTTACTACCTCCTTGGCCTCCTCCGATTTTGGCGGCTCCGCCGTGTCAAACAATTCTTCACAAGGCTTGAGAAAGACATAAGGTTCAGCTATTTCTGGATCCGATGTGCTAGGCTTCTCTCTGTAACGATATTTTCGGTTCATTGTGGTGGGTGTTTGTATTATATGGTGGCTGATAGGTACCCTCATAAAGGGAAGACATGGATCGGAGCAATAAATCCAAACTTCAGAGAGACAAGCCTTTGGATCAGATACATCTCAGCCATGTATTGGTCCATAACCACCATGTCCACCGTTGGCTATGGCGACCTCCATGCAGTTAACACCGTTGAAATGATCTTCATTATTTTCTACATGCTCTTCAACCTCGGCCTAACCGCTTACTTGATTGGTAACATGACTAACCTTGTCGTCGAGGGAACTCGCCGTACCATGGAATTCAGAAATAGCATTGAATCAGCATCAAATTTTGTGTCCCGAAATCGATTGCCTCCGAGGTTAAAAGAGCAGATCCTAGCTTACATGTGTTTGAGATTCAAAGCTGAGAGCTTGAATCACCATCATCTCATTGAGCAGCTACCAAAATCAATTTGCCAGAGCATTTGCCAGCACTTGTTCTATGAAACTGCAGAAAAAGCTTATCTTTTCAAAGGTGTCTCAAAGGAAATTCTTTTATCCTTGGTTGCAAAGATGAAGGCAGAGTATCTACCTCCTAGAGAGGATGTTATTATGCAAAATGAAGTGCCTGATGATGTTTACATCATAGTTTCTGGAGAAGTGGAGTTCATTCATTGTGAAATGGAGAAAGAGAGAGTCTTGGGGACTCTACAAACAGGTGACATGTTTGGAGAAGTTGGTGCACTTTGTTGCAGACCTCAGAGATTTACCTTTAGAACAAAGACTCTCACACAGCTTCTCAGGCTGAAAACCAGTACACTGATTGAAACAATGCAGGTTAAGAAAGAAGACAATATACAAATACTCAAGAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATCTTAGTATCAGAGATTTAATGGTGGAGAGTGTGGAAGAAGAGGATCCTGACATGGCTGTGAACTTGTTAACTGTGGCCAGCACAGGTAATGCTGTTTTTCTTGAGGAGCTTCTAAGAGCAGGTTTGGATCCTGACAATGGTGACTCAAAAGGAAAAACCCCATTGCATATAGCAGCATCAAATGGCCATGAAGATTGTGTCAAAGTTTTACTTAAGCATGCATGTAACTTACATTTGAGAGATGTGAATGGTAACACAGCATTATGGGATGCTATATCATCAAAGCATTACTCCATATTCAGAATCCTGTACCAGCTTGCTGCTCTCTCTGATCCACACGCGTCGGGTGATCTCTTATGCACAGCAGCAAAAAGAAATGATTTAGCAGTGATGAAGGAACTCTTAAAGCTAGGATTGAACCTTAACTCCAAGGATCATCAAGGAATGTCAGCAATCCAAATTGCCATGCAAGAAAACCATGTAGACATGGTTGAATTGCTTGTCATGAATGGAGCAGATGCCAATGGTGAATGTGCATATACTAATGGATTTTCTGCATTAACCTTAAATGAAATGATGCAAAAGCGCGAAGTTGGTTATCAAATCAATGTGAATGAGGCCATATCAAATGAGTTTGTGTTAGAAAAGAAACATGATGGAGAGCAAAAGACTAATAAGGGAAGTTCAAATGGATTCAATTGCCCAAGAATAAGCATATATAGAGGTCACCATATACATAGAAGAGGAAAAGGTTTCATGGAACCTGGGAAGTTAATAAGGTTACCTGATTCATTAGAGGATCTGAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAAAGATGCAGTGGTAACAGATGAAGAAGGAGCTGAGATAGATTGTATTGATGTAATCAGAGATAATGATAAGATTTTTGTTATTGTATAA 2022 0.4055 MDVASTIPYEALSYFFTGKHTVSLPYYLLGLLRFWRLRRVKQFFTRLEKDIRFSYFWIRCARLLSVTIFSVHCGGCLYYMVADRYPHKGKTWIGAINPNFRETSLWIRYISAMYWSITTMSTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIESASNFVSRNRLPPRLKEQILAYMCLRFKAESLNHHHLIEQLPKSICQSICQHLFYETAEKAYLFKGVSKEILLSLVAKMKAEYLPPREDVIMQNEVPDDVYIIVSGEVEFIHCEMEKERVLGTLQTGDMFGEVGALCCRPQRFTFRTKTLTQLLRLKTSTLIETMQVKKEDNIQILKNFLQHFKQLKDLSIRDLMVESVEEEDPDMAVNLLTVASTGNAVFLEELLRAGLDPDNGDSKGKTPLHIAASNGHEDCVKVLLKHACNLHLRDVNGNTALWDAISSKHYSIFRILYQLAALSDPHASGDLLCTAAKRNDLAVMKELLKLGLNLNSKDHQGMSAIQIAMQENHVDMVELLVMNGADANGECAYTNGFSALTLNEMMQKREVGYQINVNEAISNEFVLEKKHDGEQKTNKGSSNGFNCPRISIYRGHHIHRRGKGFMEPGKLIRLPDSLEDLKTIAGEKFGFDAKDAVVTDEEGAEIDCIDVIRDNDKIFVIV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00055 673 ProSiteProfiles Ankyrin repeat profile. 511 543 IPR002110 GO:0005515
Stsc90628g00055 673 SUPERFAMILY Voltage-gated potassium channels 32 200 - -
Stsc90628g00055 673 Pfam Ion transport protein 2 168 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90628g00055 673 SUPERFAMILY Ankyrin repeat 347 540 IPR036770 -
Stsc90628g00055 673 SMART cnmp_10 239 356 IPR000595 -
Stsc90628g00055 673 CDD CAP_ED 239 352 IPR000595 -
Stsc90628g00055 673 SMART ANK_2a 511 540 IPR002110 GO:0005515
Stsc90628g00055 673 SMART ANK_2a 479 507 IPR002110 GO:0005515
Stsc90628g00055 673 SMART ANK_2a 381 410 IPR002110 GO:0005515
Stsc90628g00055 673 SMART ANK_2a 414 443 IPR002110 GO:0005515
Stsc90628g00055 673 SMART ANK_2a 447 478 IPR002110 GO:0005515
Stsc90628g00055 673 Pfam Ankyrin repeats (3 copies) 391 469 IPR002110 GO:0005515
Stsc90628g00055 673 Pfam Ankyrin repeats (3 copies) 481 539 IPR002110 GO:0005515
Stsc90628g00055 673 ProSiteProfiles Ankyrin repeat region circular profile. 414 445 - -
Stsc90628g00055 673 FunFam Potassium channel KAT2 227 363 - -
Stsc90628g00055 673 PRINTS EAG/ELK/ERG potassium channel family signature 135 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90628g00055 673 PRINTS EAG/ELK/ERG potassium channel family signature 153 162 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90628g00055 673 PRINTS EAG/ELK/ERG potassium channel family signature 109 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90628g00055 673 PANTHER POTASSIUM CHANNEL AKT1 1 671 IPR045319 GO:0005249|GO:0006813
Stsc90628g00055 673 SUPERFAMILY cAMP-binding domain-like 166 358 IPR018490 -
Stsc90628g00055 673 Gene3D - 1 162 - -
Stsc90628g00055 673 Gene3D Jelly Rolls 206 380 IPR014710 -
Stsc90628g00055 673 PRINTS Ankyrin repeat signature 527 541 IPR002110 GO:0005515
Stsc90628g00055 673 PRINTS Ankyrin repeat signature 415 430 IPR002110 GO:0005515
Stsc90628g00055 673 Pfam KHA, dimerisation domain of potassium ion channel 600 671 IPR021789 -
Stsc90628g00055 673 Gene3D - 383 563 IPR036770 -
Stsc90628g00055 673 ProSiteProfiles Ankyrin repeat profile. 414 446 IPR002110 GO:0005515
Stsc90628g00055 673 ProSiteProfiles Ankyrin repeat region circular profile. 511 539 - -
Stsc90628g00055 673 ProSiteProfiles cAMP/cGMP binding motif profile. 239 358 IPR000595 -
Stsc90628g00055 673 ProSiteProfiles KHA domain profile. 600 673 IPR021789 -
Stsc90628g00055 673 Pfam Cyclic nucleotide-binding domain 259 342 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00055 Stsc-Chr90628 294248 297458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00055 1 419 Ion Channels AT4G22200 74.232 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00055 K21867 - gmx:100798422 1082.4