Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00052 ATGGAGAAGTACGAGCTGGTGAAGGATATAGGATCTGGCAATTTCGGTGTGGCAAGGCTTATGCGCCACAAAGAGACCAAGGAGCTCGTTGCCATGAAATACATTGAAAGGGGTCACAAGATTGATGAAAATGTTGCAAGGGAAATCATAAACCACAGAAGTCTTCGCCACCCGAATATCATTCGGTTTAAGGAGGTGGTTTTGACTCCTACACATCTTGGAATAGTGATGGAGTATGCAGCTGGTGGAGAGCTCTTCGAGCGAATTTGCAATGCTGGAAGATTCAGTGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATCTCTGGAGTTAGCTACTGCCATTCCATGCAAATTTGCCATCGAGACTTAAAGCTGGAGAATACCTTATTGGATGGCAGCCCTGCCCCTCGTCTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCTCTGCTGCATTCAAGGCCTAAATCAACAGTGGGAACTCCTGCCTACATTGCACCAGAGGTTCTTCAACGAAGAGAGTATGATGGAAAGTTGGCAGATGTATGGTCATGTGGAGTCACTCTTTATGTAATGCTGGTTGGAGCATACCCATTTGAGGACCAAGAGGATCCCAAAAACTTCAGGAAAACCATAAATCGAATTATGGCTGTCCAATACATGATCCCAGACTATGTTCACATATCTCAAGACTGTAGGCATCTGCTATCTCGCATTTTTGTGGCTAATCCAGCTAGGAGAATCACCATTAAGGAGATCAAGTCACACCCATGGTTCTTAAAGAACTTGCCTAGGGAGCTGACAGAAATGGCTCAAGCTGTCTACTATAGAAAAGAGAATCCGACCTTTTCTCTTCAGAGTATAGAAGACATCATGAAAATTGTCGAGGAGGCCAAAACTCCTCCTCCAGCTTCCAGGTCAGTTGCAGGATTTGGATGGGGTGGAGAGGAGGAGGAAGATGAAGCAAAAGAAGAAGAAGAAGCCGAGGTAGAAGAAGATGAATATGAAAAAAGGGTCAAGGAGGCACAAGCTAGTGGAGAGTTTCATGTTAGTTAA 1059 0.4448 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLQRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYMIPDYVHISQDCRHLLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEMAQAVYYRKENPTFSLQSIEDIMKIVEEAKTPPPASRSVAGFGWGGEEEEDEAKEEEEAEVEEDEYEKRVKEAQASGEFHVS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00052 352 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Stsc90628g00052 352 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc90628g00052 352 PANTHER SERINE/THREONINE KINASE 2 300 - -
Stsc90628g00052 352 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Stsc90628g00052 352 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Stsc90628g00052 352 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00052 352 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00052 352 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Stsc90628g00052 352 Coils Coil 317 346 - -
Stsc90628g00052 352 MobiDBLite consensus disorder prediction 315 333 - -
Stsc90628g00052 352 CDD STKc_SnRK2 3 259 - -
Stsc90628g00052 352 MobiDBLite consensus disorder prediction 300 352 - -
Stsc90628g00052 352 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00052 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Stsc90628g00052 352 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00052 Stsc-Chr90628 254785 257494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00052 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 42.647 1.23e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc90628g00052 Pkinase 3.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00052 K14498 - gmx:100812259 662.914