Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00047 ATGATGGATTCAGAACCAGCTTTCTTACATGGCGACTTGGATCTCTGGATTCTGGAGGCAAAAGATCTCCCAAATTTGGATCTTTCCTCCGAGACTATGCGGAAATGCATCACCATGGGAAACCGCTGTTCCCCTCCCTTTGTGAAAGGGATCAAGACACACTCAGGCAAACACAAAATGATTACCAGCGACCCCTATGTCTCCGTGTGCCTTGCAGGGGCTACCATTGCTCAAACTAGGATCATTCCTAACTGCGAAAACCCTTTGTGGGATGAGCATTTCTTGATCCCGGTTGCTCACCCTGCTCAGAAATTGGAGTTCCATGTCAAAGACAATGATGTTCTTGGTGCTGAGCTCATTGGAGTAGTGGAGATATCTGCTAAAAGAATTCTGTCCGGAGGAATCGTCAACGATTGGTTTCCGGTCATTGGCCAGAGTGGAAACTGCTTGAGACCCTATCCTGAGCTGCATCTCTCTATCCAATTTAGGCCAGTAGTTGGGGCAGAGACAGATTCTCTGGAAGTTCCTAACACCTATTTTCCTCTCAGAAAAGGAGGGTCTGTGACCCTTTATCAAGATGCACATGTACCGGATGGTATGCTGCCTGAGATTCCACTTGAAGATGGGAAGGTCTTTCAGCAGGGTAAGTGTTGGGAAGAAATTTGCCATGCCATTTTGGAAGCTCACAATCTTGTGTATATTATAGGGTGGTCGGTTTACCACCCGGTAAAGCTCGTCAGGGAGCCGTCGAAGCCCCTTCCTTCTCATGGAGAGCTTTCACTTGGAGAGTTACTGAAATACAAGTCGCAAGAAGGGGTCCGCGTTGTCGTGCTCATTTGGGATGACAAAACCTCTCATGACAAATTATTTTTGAAAACAGATGGTGTCATGCAAACTCATGATGAACAAACTAGAAAGTATTTTAAGAACACTACCGTGCATTGTGTGCTAGCTCCACGTTATGCAAGCAACACTCAAGCTTCTGGGAATAATCGGAAAATAACTGCTTTTATTGGTGGCTTGGATCTCTGTGATGGCAGATATGATACTCCTGAGCATCGGATTTTTGAAGATCTAGATACTGTCTTTCACAATGATTTTCATAATCCTGTATTCCCGTCAAATTTGCGTGGGCCAAGGATGCCATGGCATGACTTGCATTGCAAAGTCGAGGGTCCAGCTGCATATGATATATTGATCAATTTTGAACAAAGATGGAGGAAAGCCAGAAAATGGCGCGATTTTCGGGTAAAAAAGGTGACAAATTGGCATGAGGATGCTTTACTAAGCCTAGATCGCCTTTCATGGATGCTCACTCCATCTTCCAGTCCTGATGGTGAGAAAGATGCTTATGTAACTGATGAAGATGATCCTGAGAGTTGGCATGTGCAGGTATTTCGGTCCATAGATTCAGGATCCGTCATGGGTTTTCCAAAGAGTGTTGGGGAAGCAAAGTCTCAGAACCTTTTCTGTGGAAAAAATTTGAAAGTAGATAAAAGCATTCATGCTGCTTATGTAAAAGCAATCAGATCAGCGAAACACTTCGTCTACATTGAGAATCAGTATTTTCTGGGGTCCTCGTATAATTGGCGTTCACACAGAGATGCAGGTGCAAATCACTTGATTCCCATGGAATTGGCCTTAAAAATTGCCAGCAAGATCAGTGCCAATGAACGTTTTGCTGCGTATATAGTTATACCAATGTGGCCAGAGGGAGTTCCTAGTAGTTCTGCTGTTCAAGAAATTCTGTTCTGGCAGGCACAGACAATGTCTATGATGTACAAGATTGTTGCTGATGCCCTTAAAAAAGCAGGTCTTTCCCATCACTATCATCCTCAAGATTATCTCAATTTTTACTGTCTTGGAAAGCGTGAAACTTTGTCTTCAGATATTCCATCGCCAACTCAGACATCTGAAAATCGTAGTTTGAATCCAGTCAGAAAACCCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGACGAATATGTTATCATGGGATCTGCAAATATTAACCAGAGATCCATGGATGGTTCAAGGGACACAGAAATAGCCATGGGCGCTTATCAGCCAAACTATACATGGAAAGAGAAGAATTCTCATCCACATGGCCAGGTGTATGGTTACAGAATGTCACTGTGGGCTGAGCACCTAGGTACCCTTAAGGAAATATATGCAGAACCAAAGAGCCTAGAATGTATTAGGTATGTGAACTATATAGCCATTCAAAACTGGGATACATATGTATCATCAGAGGAAGTGAAGGAGCTGAGGGGACATTTGATGCAGTACCCGATTAAGGTTGGCTCTGATGGAAAAGTGAGTCCTCTCCCAGATTTTGAGTCCTTTCCTGATGTTGGTGGTAAAGTTCTTGGATCGCACACTTCGCTTCCCGATGCACTAACCACATGA 2424 0.4365 MMDSEPAFLHGDLDLWILEAKDLPNLDLSSETMRKCITMGNRCSPPFVKGIKTHSGKHKMITSDPYVSVCLAGATIAQTRIIPNCENPLWDEHFLIPVAHPAQKLEFHVKDNDVLGAELIGVVEISAKRILSGGIVNDWFPVIGQSGNCLRPYPELHLSIQFRPVVGAETDSLEVPNTYFPLRKGGSVTLYQDAHVPDGMLPEIPLEDGKVFQQGKCWEEICHAILEAHNLVYIIGWSVYHPVKLVREPSKPLPSHGELSLGELLKYKSQEGVRVVVLIWDDKTSHDKLFLKTDGVMQTHDEQTRKYFKNTTVHCVLAPRYASNTQASGNNRKITAFIGGLDLCDGRYDTPEHRIFEDLDTVFHNDFHNPVFPSNLRGPRMPWHDLHCKVEGPAAYDILINFEQRWRKARKWRDFRVKKVTNWHEDALLSLDRLSWMLTPSSSPDGEKDAYVTDEDDPESWHVQVFRSIDSGSVMGFPKSVGEAKSQNLFCGKNLKVDKSIHAAYVKAIRSAKHFVYIENQYFLGSSYNWRSHRDAGANHLIPMELALKIASKISANERFAAYIVIPMWPEGVPSSSAVQEILFWQAQTMSMMYKIVADALKKAGLSHHYHPQDYLNFYCLGKRETLSSDIPSPTQTSENRSLNPVRKPRRFMIYVHAKGMIVDDEYVIMGSANINQRSMDGSRDTEIAMGAYQPNYTWKEKNSHPHGQVYGYRMSLWAEHLGTLKEIYAEPKSLECIRYVNYIAIQNWDTYVSSEEVKELRGHLMQYPIKVGSDGKVSPLPDFESFPDVGGKVLGSHTSLPDALTT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00047 807 ProSiteProfiles C2 domain profile. 1 140 IPR000008 -
Stsc90628g00047 807 Gene3D C2 domain 10 174 IPR035892 -
Stsc90628g00047 807 Pfam Phospholipase D C terminal 727 797 IPR024632 -
Stsc90628g00047 807 SMART pld_4 281 347 IPR001736 GO:0003824
Stsc90628g00047 807 SMART pld_4 652 679 IPR001736 GO:0003824
Stsc90628g00047 807 SUPERFAMILY Phospholipase D/nuclease 176 413 - -
Stsc90628g00047 807 PANTHER PHOSPHOLIPASE D 8 797 IPR015679 -
Stsc90628g00047 807 Pfam PLD-like domain 654 688 IPR025202 -
Stsc90628g00047 807 SUPERFAMILY Phospholipase D/nuclease 462 737 - -
Stsc90628g00047 807 CDD C2_plant_PLD 9 163 - -
Stsc90628g00047 807 Gene3D Endonuclease Chain A 210 430 - -
Stsc90628g00047 807 PIRSF PLD_plant 324 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc90628g00047 807 PIRSF PLD_plant 2 328 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc90628g00047 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 652 679 IPR001736 GO:0003824
Stsc90628g00047 807 Pfam C2 domain 11 142 IPR000008 -
Stsc90628g00047 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 165 IPR035892 -
Stsc90628g00047 807 Gene3D Endonuclease Chain A 453 704 - -
Stsc90628g00047 807 SMART C2_3c 12 139 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00047 Stsc-Chr90628 232014 236482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00047 8 806 Phospholipase D Gene Family (Wang group) AT2G42010 52.209 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00047 K01115 - gmx:100779740 1324.3