Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00046 ATGGCTGTACATTCGAAATATCGGCTTATTACTTACTCAGAAGAGATTATAGATGGCCAGCCTATTTTTGTTTCTTCAAACTGTCTTCCAATCAAGGCTATGAAATATGAACCAGCTGGCCATGCCTTCCATTCTGCTGCTCTCAAACTTCTCGGTGTTCGGGAGAATAATAATGAAGATCCTGATTCTAAAAAGGTGGTTGATGATAAGGAGCAGACATATCTCCCGTCCGATTCCTACAGCAGCAAGAGCAAAAAGAAATCTGGAGACAAGCAGCAAGATCACTATGCATTGTTGGGCCTGAGCCATCTAAGATATCTTGCCACGGAGGATCAAATTCGTAAGAGCTACCGTGAAACTGCCTTGAGGTTTCATCCCGACAAACAGGCTGCTCTGCTTCTTGCCGAGGAAACTGAAGCCGCAAAGCAGGCAAAGAAAGATGAAATAGAAAGTCACTTTAAGGCCATCCAGGAGGCGTATGAGGTCTTGATTGATCCTGTGAAAAGAAGAATTTATGATTCGACAGATGAGTTTGATGATGAGATTCCAACTGATTGTGCTCCACAGGACTTCTTCAAAGTGTTTGGCCCTGCTTTTATGAGGAATGGTCGGTGGTCAGTCACTCAACCGATTCCATCACTTGGTGATGATAATACTCCAGTAAAAGAGGTTGATGATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCTCATGCTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGTGACCATAAGAGGTGGATGGAAAGGCAGAATGCGAAACTTTCCGAGAAAGCTAGGAAGGAGGAGTATGCTCGGATACGTTCCCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATATTGAGAAGAAAGGAAGAGGAGAAAGCTGAGAAGCAAAGGAAAAAAGAGGCCAAAGTCATGGCAAAGAGGATGCAGGAAGAAGAAGCAGCCAGAATTGCAGAAGAGGAGAAGCGGCGAAAGGAGGAGGAAGAGAAACGAGCTGCAGAAGCTGCTTTACAGCAGAAGAAGGTGAAGGAGAAAGAGAAAAAGCTCTTGCGAAAGGAGAGAACACGGCTGCGGAATCTCTCTGGACCTATATTGTCACAACAGTTACTTGGTATTTCTGATGATGATGTAGAGAAGCTTTGCATGTCATTTGATATGGAGAAGCTAAGGGGTTTGTGTGAGAAAATGGAGGGAAAACAGGTAGAGGACCAGGCAGAAGTTCTAAGAGATGCACTGAGTTGCAAGAAAGATGAGACTGATAAGAAAGAAGAGAGAAGCAACCAACAAAATGGTTCTGTCAAGGTTAATGGCAGTGTTTCTTTAGGCAACATTGAGAAGAAGGAGAAACCTTGGAGTAAAGAAGAGGTTGATCTATTGAAGAAAGGAATGCAGAAATATCCCAAAGGAACTTCAAGGAGATGGGAGGTTATTTCCGAATACATTGGTACTGGAAGATCAGTGGACGAAATTATGAAGGCAACAAAAACAGTTCTCCTCCAGAAGCCAGNNNNNNNNNNTGAGAAAAGGAAACCTGCAGCACAATCAATTGCATCTCCATTGTCAACCCGAGAAGAATTAGAAGGGGTATCAATTCCTGCAAAGCCTGAAAATAGTGCCGCTGCAACAACAAATAATTCAGAAGACTCTAATAGCAACCAGGCATCTGGTTCTGGTTCTGCTGCTGCTGCTCCTGCAAACGGAGTTCCCTCTAGTTCGGAACAAGACGTGTGGTCTGCAGTACAGGAAAGAGCATTGGTTCAAGCTTTAAAAGCCTTCCCAAAGGAAACTAACCAGCGATGGGAACGAGTTGCAACAGCTGTTCCTGGAAAGACTGTGAATCAGTGCAAGAAAAAGTTCGCACTGATGAAGGAGAGTTTCAGGAGCAAGAAAACTGCGGTTTAA 1926 0.4335 MAVHSKYRLITYSEEIIDGQPIFVSSNCLPIKAMKYEPAGHAFHSAALKLLGVRENNNEDPDSKKVVDDKEQTYLPSDSYSSKSKKKSGDKQQDHYALLGLSHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVTQPIPSLGDDNTPVKEVDDFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRSLVDNAYKRDPRILRRKEEEKAEKQRKKEAKVMAKRMQEEEAARIAEEEKRRKEEEEKRAAEAALQQKKVKEKEKKLLRKERTRLRNLSGPILSQQLLGISDDDVEKLCMSFDMEKLRGLCEKMEGKQVEDQAEVLRDALSCKKDETDKKEERSNQQNGSVKVNGSVSLGNIEKKEKPWSKEEVDLLKKGMQKYPKGTSRRWEVISEYIGTGRSVDEIMKATKTVLLQKPXXXXEKRKPAAQSIASPLSTREELEGVSIPAKPENSAAATTNNSEDSNSNQASGSGSAAAAPANGVPSSSEQDVWSAVQERALVQALKAFPKETNQRWERVATAVPGKTVNQCKKKFALMKESFRSKKTAV 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00046 641 MobiDBLite consensus disorder prediction 54 88 - -
Stsc90628g00046 641 MobiDBLite consensus disorder prediction 416 455 - -
Stsc90628g00046 641 CDD SANT 585 631 IPR001005 -
Stsc90628g00046 641 Pfam DnaJ domain 94 173 IPR001623 -
Stsc90628g00046 641 ProSitePatterns Nt-dnaJ domain signature. 153 172 IPR018253 -
Stsc90628g00046 641 ProSiteProfiles SANT domain profile. 580 635 IPR017884 -
Stsc90628g00046 641 MobiDBLite consensus disorder prediction 55 72 - -
Stsc90628g00046 641 MobiDBLite consensus disorder prediction 510 587 - -
Stsc90628g00046 641 SUPERFAMILY Homeodomain-like 583 635 IPR009057 -
Stsc90628g00046 641 Pfam Myb-like DNA-binding domain 584 627 IPR001005 -
Stsc90628g00046 641 SMART sant 455 508 IPR001005 -
Stsc90628g00046 641 SMART sant 581 633 IPR001005 -
Stsc90628g00046 641 MobiDBLite consensus disorder prediction 416 436 - -
Stsc90628g00046 641 SUPERFAMILY Chaperone J-domain 70 172 IPR036869 -
Stsc90628g00046 641 Coils Coil 300 368 - -
Stsc90628g00046 641 CDD DnaJ 94 165 IPR001623 -
Stsc90628g00046 641 CDD SANT 458 500 IPR001005 -
Stsc90628g00046 641 ProSiteProfiles dnaJ domain profile. 94 176 IPR001623 -
Stsc90628g00046 641 ProSiteProfiles Myb-like domain profile. 585 627 IPR001005 -
Stsc90628g00046 641 MobiDBLite consensus disorder prediction 324 348 - -
Stsc90628g00046 641 ProSiteProfiles Myb-like domain profile. 451 506 IPR001005 -
Stsc90628g00046 641 Gene3D - 452 509 - -
Stsc90628g00046 641 SUPERFAMILY Homeodomain-like 457 501 IPR009057 -
Stsc90628g00046 641 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 640 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Stsc90628g00046 641 PRINTS DnaJ domain signature 99 117 IPR001623 -
Stsc90628g00046 641 PRINTS DnaJ domain signature 117 132 IPR001623 -
Stsc90628g00046 641 PRINTS DnaJ domain signature 148 168 IPR001623 -
Stsc90628g00046 641 SMART dnaj_3 93 168 IPR001623 -
Stsc90628g00046 641 Gene3D - 576 641 - -
Stsc90628g00046 641 Gene3D DnaJ domain 77 186 IPR036869 -
Stsc90628g00046 641 MobiDBLite consensus disorder prediction 544 586 - -
Stsc90628g00046 641 FunFam Myb family transcription factor 579 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00046 Stsc-Chr90628 228555 230991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00046 81 294 C2H2 Transcription Factor Family AT1G74250 28.458 2.54e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90628g00046 DnaJ 1.6e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00046 K09522 - gmx:100814414 913.679