Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00042 ATGGAACATGAAAATATGGGAGAAGGAGAAGAGAACTTTGACTATCAAGAGCTTCTGAAAGCAACCGATAACTTCAACCCTAAAACTATGATAGGCAAAGGAAGCCATGGAATGGTCTACAAAGGTCTTCTACCACGCACGGTGGCGGTGGCCGTGGCGGTGAAGAAACCATCGTCGCTTCAAGAATCTCTCCACCACCACCATGACGATAACTCCAACAAGCTCCAAAACGAGATTCGAGTGCTCTCAATTCTACGTAAAAGCCCTCACGTGCTTAACCTCTTAGGCACGTGCCGCGACTCGTTCGATAACAAGGTGATGGTGATGGAGCTCTTGCCCAACGGCTCCCTCCACGACTGGCTTCACGGTTCAAGAAGACCACCGCCGTCGTGGACGAAGCGCGTGGAGATCGCCATGCAGATCTCACGCGCGGTGCAGTTTCTCCACGAAGGGAAGCCTATGGTGATCCACAGGGACATCAAGTCCACCAACATCTTGTTCGATTCAGAGATGAACGCTAAATTGGGGGATTTTGGACTGGCGGTTATGGTTGGAACGGTTATCGAGTCAGCAGCGAGTCAACCCGCTGGGACAATAGGGTACATAGATCCGAGTTACACGAGTTCTGAAAAACTGAGCACGAAGAACGATATTTTCAGCTTGGGGGTTGTGTTGTTGGAGATCATGAGTGGGAGGAAGGCCATTGACGTGTCGAAAACGCCGGCGTCGATTGTGGAGTGGGCGGTTCCGTTGTTGGAGAGGAATTTTGGTGTGAAAGAGATTTGTGATGGGAGGGTGGCGGTGCCGGCGTACATGGCGGGTGCGGTGGGTGAGATAGTGCGGTTGGCGGGACGGTGTGTGGCGGAGAAGGAAGAGGATCGTCCGTGCGCGAGGGAAGTTGTTATGAGAATAATGGAAGTAGCGGAATGTGTGAGTGTGAGGGTGATGAGGTTCCCTTTTTGGAGAAGTGTGTTTATGAGGATGGTGGGAATGGGATTCAGGAGAAATAATAATAAGAGGAGGAAGTTGTTGATGATGAATGATAGTTCAAACTCCTCATCCATTATCACGTTTAAGAATGTTTTGGCTGATGTTACCTTCACCTAG 1107 0.5023 MEHENMGEGEENFDYQELLKATDNFNPKTMIGKGSHGMVYKGLLPRTVAVAVAVKKPSSLQESLHHHHDDNSNKLQNEIRVLSILRKSPHVLNLLGTCRDSFDNKVMVMELLPNGSLHDWLHGSRRPPPSWTKRVEIAMQISRAVQFLHEGKPMVIHRDIKSTNILFDSEMNAKLGDFGLAVMVGTVIESAASQPAGTIGYIDPSYTSSEKLSTKNDIFSLGVVLLEIMSGRKAIDVSKTPASIVEWAVPLLERNFGVKEICDGRVAVPAYMAGAVGEIVRLAGRCVAEKEEDRPCAREVVMRIMEVAECVSVRVMRFPFWRSVFMRMVGMGFRRNNNKRRKLLMMNDSSNSSSIITFKNVLADVTFT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00042 368 ProSiteProfiles Protein kinase domain profile. 25 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00042 368 Pfam Protein kinase domain 27 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00042 368 Gene3D Phosphorylase Kinase; domain 1 2 110 - -
Stsc90628g00042 368 SUPERFAMILY Protein kinase-like (PK-like) 11 328 IPR011009 -
Stsc90628g00042 368 ProSitePatterns Protein kinases ATP-binding region signature. 31 56 IPR017441 GO:0005524
Stsc90628g00042 368 SMART serkin_6 25 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00042 368 Gene3D Transferase(Phosphotransferase) domain 1 112 316 - -
Stsc90628g00042 368 PANTHER OS01G0253100 PROTEIN 11 304 - -
Stsc90628g00042 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00042 Stsc-Chr90628 210446 211660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00042 13 295 Receptor kinase-like Gene Family AT3G59420 42.561 1.99e-60 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc90628g00042 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00042 - - lang:109334080 367.081