Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00027 ATGAGCACCCTCCAGTTCCTCAACATCTCCAGCAACCTCTTCGGTGGACACCTCCATTGGAACTACTCCACCCTCCCTAGCCTCCAAGTTCTCGACGCCTACGACAACAACTTCACCGCCTTGCTTCCCGTGGGGATTCTCACTCTCAAGAACCTCACTTACTTGGACCTCGGCGGCAACTACTTCTACGGCGAAATCCCGCCAAGCTACGGCAGCCTGGCGGGGCTAAACTACCTTTCTCTGGCGGGAAACGACCTTCGCGGACGAATCCCGCCGGAGTTAGGCAACCTCACCAACCTCAGGGAGTTATACTTAGGCTACTACAACTCCTTTGTAGGCGGCATTCCGGTGCAGTTCGGAAAACTCGTGAATTTGGTGCATATGGATCTGTCAAGCTGCGACTTGGACGGTCAAATTCCAAGAGAGTTAGGGAGGTTGAACCAGCTTGACACTCTTTACCTCCACATTAACCAACTCTCCGGTTTGATCCCCAAGGAGCTCGGAAACTTAACGGTTCTTGTGAATCTTGACTTGTCCAGTAATGCACTCACCGGGGAGATTCCGGTCGAGTTCGCCAACCTCAGGCGACTCAAGCTCTTTAACCTCTTCTTGAACAGGCTCCACGGCTCCATACCGGACTACATTGCGGAGTTCCCGGAGCTGGAAACGCTCGGCCTCTGGATGAACAACTTCACCGGCGAGATTCCCTACGGCCTCGGCTTCAACGGCAAGCTTCAGGTCATTGATTTGTCCTCTAACAAGCTCACCGGCGTGATTCCTCCTCATCTCTGTTCCTCTAAGCAGCTCAGGATTCTCATTCTCCTCAATAATTTCCTCTTCGGACCAATCCCCGACGGTTTCGGAACGTGTTACAGTCTCACCAGAGTGAGGTTAGGACAGAATTACCTCAACGGAACCATCCCTAACGGCTTTCTCTACCTTCCTAACCTCAACTTAGCCGAGTTGCAGAACAACTACCTCACCGGAGCATTGCCGGAGAATTCCAATAGCTCTTCGCAGCCACAGAATTTAGCTCAGCTTGATTTGTCAAACAATGCATTGTCCGGTCCGCNNNNNNNNNNTAATTCGATTTCAAACTTCACCTCTGTTCAGATCCTTTTGCTGAGCGGGAACCAATTCTCAGGTCCAATTCCGGCTTCCATTGCAGGACTGAGTCAAGTACTGAAGCTTGATCTAAGCAGGAATTCGTTATCCGGTGAAATTCCACCGGAGATTGGTTACTGCAACCACCTTACCTACCTTGACATGAGCCAGAACAATCTCTCTGGCTCTATCCCGCCACTCATAGCGAATATCCGCATTTTGAATTACCTAAACTTGTCAAGAAACCATTTGAACCAAACCATCCCTAAATCAATAGGCACCATGAAGAGTCTCACCATTGCAGACTTCTCCTTCAATGAATTCTCCGGTAAGTTACCGGAGTCAGGCCAGTTTTCGTTCTTCAACGCCTCCTCTTTCGCAGGGAACCCTCAACTCTGCGGCTCTATGCTCAACAACCCCTGTAACTTCACCAGAATCACAACACAACAGGGAAAACGCTCTCCGGATTTCAAACTCATATTTGCTCTAGGGCTCTTGATCTGCTCCCTGGTGTTCGCAGTTGCAGCCATAATCAAGGCCAAGTCCTTCAAGAAGAATGGCCCCGGTTCATGGAAAATGACGGCATTCCAGAAGGTGGAATTCAGAGTCTCGGACATCATGGAATGCGTGAAAGACGGTAACGTGATCGGAAGAGGAGGCGCCGGGATTGTTTACCACGGGAAGATGCCAAACGGAGTTGAAGTCGCAGTTAAGAAGCTACTTGGAATGGGTGCGAGCAGCCATGATCATGGATTCAGAGCAGAGATTCAAACACTGGGGAACATTAGGCATAGAAACATAGTGAGGCTGCTAGCTTTCTGCTCCAACAAGGAGACGAACCTGCTGGTGTATGAATACATGAGGAATGGAAGCTTAGGGGAAGCATTGCATGGGAAGAAGGGTGCGTTCTTGAATTGGAAGTTGAGATACAAAATCGCCATTGATTCAGCTAAGGGACTGTGTTACCTTCACCATGATTGTTCACCCTTGATTGTCCACCGTGACGTTAAGTCCAACAACATTTTGTTGAATTCTAATTTTGAAGCACACGTGGCGGATTTCGGCCTCGCCAAGTTCTTGGTGGACGGCGGCGCCTCCGAGTACATGTCTTCCATTGCCGGCTCCTACGGCTACATTGCACCCGAATATGCATACACATTGAGGGTTGACGAAAAGAGTGACGTATATAGTTTCGGAGTAGTGGTATTAGAGCTTCTGACCGGAAGGAAACCGGTGGGAGCGGAGTTCGGTGAAGGAGTGGATCTGGTTCAATGGTGCAAGAAAGCAACGAATGGGAGGAAAGAAGAGGTTATGAACATAATTGATAAGAGGCTAAGCGTGGTCCCAAAAGAAGAAGCCATGCACCTTTTATTCATTTCAATGCTGTGCTTAGAAGAAAACAGTGTGGAGAGACCAACCATGAGGGAAGTCGTTCAAATGCTCTCTGAATTCCCTCCTTCTTCCTCATCTCCTCAATTACACCAATCTTCTACTTCCTCTCAAATACCTCACAAACACAAAGATTCTTCTCCTCCTCCTCCTCCTCCACTTCCCACTTCTAATAAACAACATCTTTTGGTTTAA 2688 0.487 MSTLQFLNISSNLFGGHLHWNYSTLPSLQVLDAYDNNFTALLPVGILTLKNLTYLDLGGNYFYGEIPPSYGSLAGLNYLSLAGNDLRGRIPPELGNLTNLRELYLGYYNSFVGGIPVQFGKLVNLVHMDLSSCDLDGQIPRELGRLNQLDTLYLHINQLSGLIPKELGNLTVLVNLDLSSNALTGEIPVEFANLRRLKLFNLFLNRLHGSIPDYIAEFPELETLGLWMNNFTGEIPYGLGFNGKLQVIDLSSNKLTGVIPPHLCSSKQLRILILLNNFLFGPIPDGFGTCYSLTRVRLGQNYLNGTIPNGFLYLPNLNLAELQNNYLTGALPENSNSSSQPQNLAQLDLSNNALSGPXXXXNSISNFTSVQILLLSGNQFSGPIPASIAGLSQVLKLDLSRNSLSGEIPPEIGYCNHLTYLDMSQNNLSGSIPPLIANIRILNYLNLSRNHLNQTIPKSIGTMKSLTIADFSFNEFSGKLPESGQFSFFNASSFAGNPQLCGSMLNNPCNFTRITTQQGKRSPDFKLIFALGLLICSLVFAVAAIIKAKSFKKNGPGSWKMTAFQKVEFRVSDIMECVKDGNVIGRGGAGIVYHGKMPNGVEVAVKKLLGMGASSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKGAFLNWKLRYKIAIDSAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFLVDGGASEYMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVVLELLTGRKPVGAEFGEGVDLVQWCKKATNGRKEEVMNIIDKRLSVVPKEEAMHLLFISMLCLEENSVERPTMREVVQMLSEFPPSSSSPQLHQSSTSSQIPHKHKDSSPPPPPPLPTSNKQHLLV 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00027 895 Gene3D Ribonuclease Inhibitor 1 108 IPR032675 -
Stsc90628g00027 895 SUPERFAMILY L domain-like 242 502 - -
Stsc90628g00027 895 Gene3D Ribonuclease Inhibitor 109 215 IPR032675 -
Stsc90628g00027 895 MobiDBLite consensus disorder prediction 850 874 - -
Stsc90628g00027 895 Gene3D Phosphorylase Kinase; domain 1 543 654 - -
Stsc90628g00027 895 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 110 215 - -
Stsc90628g00027 895 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 222 513 - -
Stsc90628g00027 895 Gene3D Transferase(Phosphotransferase) domain 1 655 873 - -
Stsc90628g00027 895 Pfam Protein kinase domain 580 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00027 895 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 120 - -
Stsc90628g00027 895 MobiDBLite consensus disorder prediction 848 895 - -
Stsc90628g00027 895 Pfam Leucine Rich Repeat 244 264 IPR001611 GO:0005515
Stsc90628g00027 895 SMART serkin_6 578 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00027 895 SUPERFAMILY Protein kinase-like (PK-like) 571 849 IPR011009 -
Stsc90628g00027 895 ProSiteProfiles Protein kinase domain profile. 578 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00027 895 Gene3D Ribonuclease Inhibitor 220 512 IPR032675 -
Stsc90628g00027 895 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 547 654 - -
Stsc90628g00027 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Stsc90628g00027 895 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 22 109 - -
Stsc90628g00027 895 SMART LRR_typ_2 243 266 IPR003591 -
Stsc90628g00027 895 SMART LRR_typ_2 439 463 IPR003591 -
Stsc90628g00027 895 SMART LRR_typ_2 391 415 IPR003591 -
Stsc90628g00027 895 SMART LRR_typ_2 146 169 IPR003591 -
Stsc90628g00027 895 SMART LRR_typ_2 25 49 IPR003591 -
Stsc90628g00027 895 SMART LRR_typ_2 73 97 IPR003591 -
Stsc90628g00027 895 SMART LRR_typ_2 170 193 IPR003591 -
Stsc90628g00027 895 SUPERFAMILY L domain-like 14 308 - -
Stsc90628g00027 895 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 655 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00027 Stsc-Chr90628 139824 144205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00027 1 880 Receptor kinase-like Gene Family AT5G65700 58.764 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90628g00027 Pkinase 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00027 - - qsa:O6P43_031479 1383.62