Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00018 ATGGCGTCTGCAAGCCTTGGAAATGGTGGGGTCGGCAGTTCCAGGTCTGTTAATGGCTTGAGAGGCTCGTCTAGTTCGGTTGATTGGCTTGGGAGAGAGATGCTTGAGATGAGATTGAGGGACAAAGTGGACCATGAAGACGACAGAGATAGTGAGCCGGACATCATTGATGGTGTGGGTGCTGAAACAGGACATGTGATAAGAACCAGCATCGGTGGCCGAAATGGTCAATCTAGACAGAATGTTAGCTATATTGCCGAACATGTGGTCGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCAAAATGTAGAGAAACTGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGAGAACTACAGATAATGCAAATGCTGGACCATCCAAATATTGTTGCCCTTAGGCATTGTTTCTATTCAACGACCGACAAAGAAGAAGTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGTATTGCGAGGAACTATAGCCGGATGAATCAGCGAATGCCTCTAATATATGTAAAGCTTTATACCTATCAGATTTGCAGGGCCCTTGCTTACATACATAATTGCATTGGTATATGTCACCGTGACATCAAACCTCAGAACTTACTTGTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGAAGTGCTAAAGTGTTGGTGAAAGGAGAACCTAATCTTATATTGCAGCCTTTGTTTCCTGGAGAGAGTGGGGTTGATCAACTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACAAGAGAGGAGATAAAGTGCATGAACCCAAATTATACCGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTCTTTCAAAAGCGTTTACCCCCAGAAGCAGTAGACCTTGTCTGTAGGTTTTTTCAATACTCTCCCAATCTGCGATGCACAGCTTTGGAAGCTTGCATTCATCCTTTCTTCGATGAGTTGAGGGACCCTAACACCCGCCTTCCTAATGGTCGTCCACTTCCACCTCTGTTTAATTTTAAGCCTCAGGAACTTTCTGGGATACCACCTGACGTCATCAATCGGCTTATTCCAGAGCATGCTCGTAAGCAGAACTTGTTCATGGCATTGCACAACTAG 1158 0.437 MASASLGNGGVGSSRSVNGLRGSSSSVDWLGREMLEMRLRDKVDHEDDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSRQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFYSTTDKEEVYLNLVLEYVPETVNRIARNYSRMNQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNLILQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHN 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00018 385 CDD STKc_GSK3 79 334 IPR039192 -
Stsc90628g00018 385 ProSiteProfiles Protein kinase domain profile. 84 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00018 385 MobiDBLite consensus disorder prediction 1 23 - -
Stsc90628g00018 385 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 52 242 - -
Stsc90628g00018 385 FunFam Glycogen synthase kinase-3 beta 68 163 - -
Stsc90628g00018 385 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
Stsc90628g00018 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Stsc90628g00018 385 Gene3D Transferase(Phosphotransferase) domain 1 164 242 - -
Stsc90628g00018 385 Gene3D Transferase(Phosphotransferase) domain 1 243 375 - -
Stsc90628g00018 385 SUPERFAMILY Protein kinase-like (PK-like) 83 358 IPR011009 -
Stsc90628g00018 385 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Stsc90628g00018 385 Pfam Protein kinase domain 86 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00018 385 SMART serkin_6 84 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00018 Stsc-Chr90628 100106 104547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00018 90 339 Core Cell Cycle Gene Families AT1G76540 29.153 2.20e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Stsc90628g00018 Pkinase 7.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00018 K03083 - jre:108983720 720.694