Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00013 ATGGGTTGCGTATGTTTCAAACCGAAATCTGCAGGTGAATATGTTGCAGAGAATCACATAAAAAGGGCCAAGTCGAAGGCGTTGAACAAAAGGCTTGCGGGTACTGCTTCCCTTGGCCTCATAGAATTTGGGAATGATGGCACTACATGCTCTTCCACCACAAAGGGAAAACCACGGGATCAGGTGGCCGGAGCACCGACGGTGTTCAGTGTCGCGAACGGGGAGCGAGGAGCTCAGGTTATCGCTGGCTGGCCATCTTGGCTCACTGCCGTTGCTGGGGAAGCCATTAGTGGTTGGGTTCCTCGCAGAGCTGACTCCTTTGAGAAGTTGGATAAGATTGGACAAGGAACTTATAGTAGTGTTTATAGAGCTCGTGATCTTGAAACGAATAAGATTGTTGCATTAAAGAAGGTCCGATTTGCTACTATGGATCCTGAAAGCGTTCGCTTTATGGCAAGGGAGATTATTTTGCTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTAGAAGGCGTGATTACGTCGAGGGTTTCTGGTGGCTTGTACCTTATTTTTGAGTATATGGAACATGATCTTGCAGGGCTTGCAGCAATACCTGGCATCAAGTTTTCTGAAGCACAGATCAAATGTTATATGCAGCAACTGCTTCGTGGTCTTGAGCATTGCCATGGTCGAGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTAGTTGATTATAATGGCCATTTGAAGATTGGAGATTTTGGACTTGCAACTTCGTTTCAGCCATCTAAGAGGCAGCCTTTAACAAGTCGTGTCGTCACCTTGTGGTACCGACCACTTGAACTTTTACTCGGAGCTACAGATTATGGAGCTTCCGTTGACTTGTGGAGTTCTGGTTGTATTCTTGCTGAATTGTTTTCTGGGAAGGCTATAATGCCTGGACAAACAGAGGTGGAGCAACTTCATAACATTTTCAAACTTTGTGGGTCTCCTTCTGAAGAATACTGGAAGAAATCAAAGCTACCAAATACAACAATTTTCAAGCCTCAACAACCATATAAACGCATTGTTTCTGAGACATTCAAGGATTTTCCTTCATCTGCACTGAGCCTATTGGAGTTACTTCTTGCTATAGAACCCCAAGATCGAGGAACAGCATCTTTTGCACTTCAAAATGAGTTCTTCACCACAGTGCCACTTCCATGTGATCCATCAACTTTGCCAAAGTACCCACCAAGTAAGGAGTTTGATGTCAAACTTCGACAAGAGGAAGCTAGAAGCAGAACGAGATCAACAAATAAAGGGCATGAACTAGTATCAGTTAGGAGGAAGTTAAAAGCGTCTAAAAATGTTCTCGCTCCTGCTTCGAATGCTGAATTGCGAGCACCAATAGAGAAGCGACAAAGGCAACCTAATTCTAAATCCATTAGTGAAAGCTACAATCCTAAAAGGGATGACAACTCTAGCTTCCTTCTTGAACTTGCAAAGGCAAGAGTTCCCGATGCCTTCTCTCATTCTGGCCAGTCAGTGCATCCAAGTACTTATGGTTCCTCAAACAATATGAATTTGAAAGAGGAAAATGTTCTTATTGGCCTCAGTCATGACTTTGGATCAAGACACACTGAATTGAGTAAACAAAAATTATCTTGGCTTGATGGCACACAATTGTCCAAATTTTCTAGTTCATTTGCAGTTCAAGGTGATGGCAAATCGATTGATTTTCTGGATGAACGGAAATCGCGCGGGAAGGACTTCAATACTTTTGAAAAGGAACCTACCATGGGCCATGCTGCCAGAAACAAAACTTTCCACTATTCTGGACCATTGTTGTCACAGGGAGGGAACATTGAAGACATGCTCAAGGAGCACGAAAGGCAAATCCAACAGGCTGTCCGCAAAGCTCGTTTGGACAAGGACAACATTAAAAGGGATAACAAGGAGAATGTCCTAACTGAATCACTACTGTTACACCATGTGTGA 1968 0.4375 MGCVCFKPKSAGEYVAENHIKRAKSKALNKRLAGTASLGLIEFGNDGTTCSSTTKGKPRDQVAGAPTVFSVANGERGAQVIAGWPSWLTAVAGEAISGWVPRRADSFEKLDKIGQGTYSSVYRARDLETNKIVALKKVRFATMDPESVRFMAREIILLRRLDHPNVMKLEGVITSRVSGGLYLIFEYMEHDLAGLAAIPGIKFSEAQIKCYMQQLLRGLEHCHGRGVMHRDIKGSNLLVDYNGHLKIGDFGLATSFQPSKRQPLTSRVVTLWYRPLELLLGATDYGASVDLWSSGCILAELFSGKAIMPGQTEVEQLHNIFKLCGSPSEEYWKKSKLPNTTIFKPQQPYKRIVSETFKDFPSSALSLLELLLAIEPQDRGTASFALQNEFFTTVPLPCDPSTLPKYPPSKEFDVKLRQEEARSRTRSTNKGHELVSVRRKLKASKNVLAPASNAELRAPIEKRQRQPNSKSISESYNPKRDDNSSFLLELAKARVPDAFSHSGQSVHPSTYGSSNNMNLKEENVLIGLSHDFGSRHTELSKQKLSWLDGTQLSKFSSSFAVQGDGKSIDFLDERKSRGKDFNTFEKEPTMGHAARNKTFHYSGPLLSQGGNIEDMLKEHERQIQQAVRKARLDKDNIKRDNKENVLTESLLLHHV 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00013 655 FunFam probable serine/threonine-protein kinase At1g54610 94 189 - -
Stsc90628g00013 655 Gene3D Phosphorylase Kinase; domain 1 102 194 - -
Stsc90628g00013 655 Pfam Protein kinase domain 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00013 655 Coils Coil 616 636 - -
Stsc90628g00013 655 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Stsc90628g00013 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Stsc90628g00013 655 Gene3D Transferase(Phosphotransferase) domain 1 195 431 - -
Stsc90628g00013 655 PANTHER CELL DIVISION PROTEIN KINASE 105 397 - -
Stsc90628g00013 655 ProSiteProfiles Protein kinase domain profile. 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90628g00013 655 CDD STKc_CDK9_like 107 391 - -
Stsc90628g00013 655 FunFam probable serine/threonine-protein kinase At1g54610 190 431 - -
Stsc90628g00013 655 SUPERFAMILY Protein kinase-like (PK-like) 100 399 IPR011009 -
Stsc90628g00013 655 MobiDBLite consensus disorder prediction 452 481 - -
Stsc90628g00013 655 SMART serkin_6 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00013 Stsc-Chr90628 74555 79016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00013 99 430 Core Cell Cycle Gene Families AT5G10270 49.714 1.35e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc90628g00013 Pkinase 9.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00013 - - aip:107638508 1033.48