Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00011 ATGCAGGTGAAAACCAAAACCGAAGAAGGCAATGCAGCTGGCTCTATCCTCGTCATGACGAAGCTCGTTCTAGTCATGGGCTACAGGTGCCATCTCTGGTTATCCACCACCCCTCACTCACCTGACGACAGGATACCGGTTGAGCCAGTCTCTGAAAGGGGCCTCTCCTCCTCCGACCTGGAGAAGCTACCCAAGATCACCGGTAAGGAACTCCTCATGGACACCGAATGCGCCATCTGCCTCGATGAGATCGAGAACGAGCAACTGGCTCGCCTGGTTCATGGTTGCAACCATGCCTTCCATGTGGAATGCGTTGATACCTGA 324 0.5432 MQVKTKTEEGNAAGSILVMTKLVLVMGYRCHLWLSTTPHSPDDRIPVEPVSERGLSSSDLEKLPKITGKELLMDTECAICLDEIENEQLARLVHGCNHAFHVECVDT 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00011 107 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 107 - -
Stsc90628g00011 107 MobiDBLite consensus disorder prediction 37 58 - -
Stsc90628g00011 107 SUPERFAMILY RING/U-box 70 106 - -
Stsc90628g00011 107 ProSiteProfiles Zinc finger RING-type profile. 77 107 IPR001841 -
Stsc90628g00011 107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 107 IPR013083 -
Stsc90628g00011 107 Pfam RING-like zinc finger 76 105 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00011 Stsc-Chr90628 62925 64399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00011 5 107 C3H Transcription Factor Family AT5G42200 39.831 3.68e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00011 K19037 - zju:107422320 115.161