Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc90628g00011 | ATGCAGGTGAAAACCAAAACCGAAGAAGGCAATGCAGCTGGCTCTATCCTCGTCATGACGAAGCTCGTTCTAGTCATGGGCTACAGGTGCCATCTCTGGTTATCCACCACCCCTCACTCACCTGACGACAGGATACCGGTTGAGCCAGTCTCTGAAAGGGGCCTCTCCTCCTCCGACCTGGAGAAGCTACCCAAGATCACCGGTAAGGAACTCCTCATGGACACCGAATGCGCCATCTGCCTCGATGAGATCGAGAACGAGCAACTGGCTCGCCTGGTTCATGGTTGCAACCATGCCTTCCATGTGGAATGCGTTGATACCTGA | 324 | 0.5432 | MQVKTKTEEGNAAGSILVMTKLVLVMGYRCHLWLSTTPHSPDDRIPVEPVSERGLSSSDLEKLPKITGKELLMDTECAICLDEIENEQLARLVHGCNHAFHVECVDT | 107 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc90628g00011 | 107 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 16 | 107 | - | - | |
Stsc90628g00011 | 107 | MobiDBLite | consensus disorder prediction | 37 | 58 | - | - | |
Stsc90628g00011 | 107 | SUPERFAMILY | RING/U-box | 70 | 106 | - | - | |
Stsc90628g00011 | 107 | ProSiteProfiles | Zinc finger RING-type profile. | 77 | 107 | IPR001841 | - | |
Stsc90628g00011 | 107 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 107 | IPR013083 | - | |
Stsc90628g00011 | 107 | Pfam | RING-like zinc finger | 76 | 105 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc90628g00011 | Stsc-Chr90628 | 62925 | 64399 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc90628g00011 | 5 | 107 | C3H Transcription Factor Family | AT5G42200 | 39.831 | 3.68e-21 | 80.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc90628g00011 | K19037 | - | zju:107422320 | 115.161 |