Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00007 ATGGCTTCTAATCAGATTCAGACATCTACTTCAATCCATGCAGGGTCAACCAATGATGCTTTATACAAGGAACTGTGGCATGCCTGTGCTGGACCTCTTGTCACTCTTCCTCGTGAAGGGGAAAGGGTTTATTACTTTCCACAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTTCCATCTAAGATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACTGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGGTAAGCCCTGATGATCCTCTGCCTGAACCACCAAGATGTACAGTCCATTCATTTTGCAAGACACTTACCGCTTCTGACACCAGCACACATGGGGGTTTCTCTGTTCTCCGAAGACATGCGGATGATTGTCTGCCCCCACTGGATATGTCTCAGCAACCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCAAGACGCCACTTATTGACAACTGGTTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTTTTAAGGGGTGAAAATGGAGAGCTCCGAGTAGGAGTTAGGAGGCTCATGAGACAGCAGAACAATATGCCATCTTCAGTTATATCGAGTCACAGTATGCATCTAGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACACTCTTTTCTGTGTTTTATAAGCCCAGAACAAGCCGGTCGGAGTTTATTGTGAGTGTCAATAAATATCTTGAAGCTCGAAGTCATAAACTGTCGGTTGGTATGAGATTCAAAATGAGATTTGAAGGTGATGAGGTTCCTGAAAGAAGGTTCAGTGGGACAATTGTTGGTGTTGGAGATAGCACATCATCGGTATGGGCTGATTCTGAGTGGCGATCGTTGAAGGTTCAATGGGATGAACCATCGTCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCACCGCTACAAACTCCCAGCCAGCCCAAAGAACAAAGAGATCGCGGCCTCCAATCCTGCCTTCACCAATGCCTGATTCCTCAATGCAAGGTATCTTGCTCTTACACAATTTCTTCATGCCAATGTTATTCTTTTACACACATTCTTATCTTTGCACCAGGTGTATGGAAACCACCAGTTGA 1260 0.4437 MASNQIQTSTSIHAGSTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVVSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDSTSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTTATNSQPAQRTKRSRPPILPSPMPDSSMQGILLLHNFFMPMLFFYTHSYLCTRCMETTS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00007 419 SMART B3_2 126 228 IPR003340 GO:0003677
Stsc90628g00007 419 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Stsc90628g00007 419 MobiDBLite consensus disorder prediction 360 382 - -
Stsc90628g00007 419 Gene3D - 289 363 - -
Stsc90628g00007 419 FunFam Auxin response factor 124 228 - -
Stsc90628g00007 419 CDD B3_DNA 124 226 IPR003340 GO:0003677
Stsc90628g00007 419 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 381 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc90628g00007 419 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc90628g00007 419 SUPERFAMILY DNA-binding pseudobarrel domain 115 255 IPR015300 -
Stsc90628g00007 419 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Stsc90628g00007 419 Gene3D - 123 228 IPR015300 -
Stsc90628g00007 419 FunFam Auxin response factor 289 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00007 Stsc-Chr90628 37772 40923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00007 14 382 B3 DNA Binding Superfamily AT1G59750 84.906 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc90628g00007 B3 3.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00007 K14486 - gmx:100793224 747.273