Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90628g00003 ATGATAAGGAGCATAATCCAAGACATGAGGTCTCGTTCCCACCGCGTCGTTCAAGACTTGTCTTCCATGGAAGAAGATTCACCAGCTTCACACTTGATCGCCGACGATGGCTTGAGGCAGAGTTGCTGGGCTCAGATGCCGCAGGAGCTTCTCAGAGAGGTTCTCGTCAGGATCGAGGCGTCGGAGGCGGCGTGGCCACCGAGGAAGAGCGTCGTAGCCTGCGCCGGAGTTTGCCGGAGCTGGAGGCACATCACTAAAGAGATCGTTAAGACTCCTGAGTTATCAGCAAAATTGACTTTCCCAATTTCTGTGAAGCAGGTTCCACTATCTGAAGATGGGAAGTTCCTTTTGGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATTATCTCTCTGCATGCAGATGACATGTCAAAGGGAAGCAACACCTATGTTGGAAAACTCAGATCAAATTTTCTCGGAACCAAGTTCACAATCTATGATGGCCAGCCACCACATGCCAGGGCAAAGATTACAAAAAGTCGCTCCACCAGGCTGGTGAATTTAAAACAAGTTGCACCCAAGGTTCCTACAGGAAATTATCCAGTGGCTCACATATCATATGAATTGAATGTGTTAGGCTCTAGGGGGCCCAGGAGAATGAACTGTGTCATGGATTCCCTTCCTGCTTCTGCAATTGAACCGGGAGGCGTGGCCCCTACACAGACCGAGTTTTCCCTCAGCAATGCAGATATGTTCCCCACATTCCCCTTTTTCCGATCAAGGTCAAATCGTGTGGACAACTCCCTTTCTGGACCCCTGGCTGATCAAAAGGATGGGGTTCTGGTGTTAAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTGAACTTTCACGGGCGGGTGACAATTGCTTCGGTTAAAAACTTTCAGCTCGTGGCTTCGCCGGAGAATGGACCTGCTGGACCAGAACATGATAAGATCATACTTCAGTTTGGAAAAGTTGGGAAGGATTTATTTACAATGGATTATCGATATCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCATGTGAATAA 1104 0.4855 MIRSIIQDMRSRSHRVVQDLSSMEEDSPASHLIADDGLRQSCWAQMPQELLREVLVRIEASEAAWPPRKSVVACAGVCRSWRHITKEIVKTPELSAKLTFPISVKQVPLSEDGKFLLAARKCRRPTCTDYIISLHADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHARAKITKSRSTRLVNLKQVAPKVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSLPASAIEPGGVAPTQTEFSLSNADMFPTFPFFRSRSNRVDNSLSGPLADQKDGVLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90628g00003 367 SUPERFAMILY F-box domain 37 86 IPR036047 GO:0005515
Stsc90628g00003 367 PRINTS Tubby superfamily signature 297 313 IPR000007 -
Stsc90628g00003 367 PRINTS Tubby superfamily signature 279 296 IPR000007 -
Stsc90628g00003 367 PRINTS Tubby superfamily signature 324 343 IPR000007 -
Stsc90628g00003 367 PRINTS Tubby superfamily signature 146 170 IPR000007 -
Stsc90628g00003 367 PRINTS Tubby superfamily signature 345 367 IPR000007 -
Stsc90628g00003 367 PRINTS Tubby superfamily signature 130 146 IPR000007 -
Stsc90628g00003 367 PRINTS Tubby superfamily signature 195 222 IPR000007 -
Stsc90628g00003 367 Pfam F-box domain 43 90 IPR001810 GO:0005515
Stsc90628g00003 367 ProSitePatterns Tub family signature 2. 352 367 IPR018066 -
Stsc90628g00003 367 Pfam Tub family 95 362 IPR000007 -
Stsc90628g00003 367 CDD F-box_AtTLP-like 43 87 - -
Stsc90628g00003 367 ProSitePatterns Tub family signature 1. 297 310 IPR018066 -
Stsc90628g00003 367 Gene3D Tubby Protein; Chain A 84 367 IPR025659 -
Stsc90628g00003 367 PANTHER TUBBY-RELATED 22 365 - -
Stsc90628g00003 367 SUPERFAMILY Tubby C-terminal domain-like 109 367 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90628g00003 Stsc-Chr90628 12317 15065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90628g00003 10 367 TUB Transcription Factor Family AT2G47900 66.581 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc90628g00003 Tub 4e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90628g00003 K19600 - gmx:100778346 621.313