Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90627g00063 ATGGGTTGCTTCTCCTGTTTCGATTCGAGGGAGGATCAGAAACTGAATCCCCATGGCGAGCACGATCACGATCACGATCATCTTCGCAAGCAGCATCAGCAGCACCCTCACCCATCCAATCCAGCTCTACCTTCTCACATCTCCCGATTGCCCTCTGGAGCAGACAAGTTGAGGTCAAGAAGTAACGGGGGTTCCAAAAGGGAGCTGCCTGCTCCCAAGGATGGGTCTGGTGGCCAAATTGCTGCTCAAACTTTTACTATACGTGAGCTTGCGGCTGCAACTAAGAACTTCAGGCCGGAGTCCTTCATAGGGGAAGGTGGTTTTGGAAGGGTCTACAAAGGGAAGCTGGAGAGCACTGGTCAGATTGTTGCTGTTAAACAGTTAGACAGAAATGGTCTTCAGGGCAACCGGGAATTCCTTGTAGAAGTTCTCATGCTTAGTCTTTTACATCACCCTAATCTTGTGAATCTCATTGGATATTGTGCGGATGGTGAACAGCGCCTCCTTGTCTATGAATTTATGCCATTGGGATCATTGGAAGACCACCTTCATGATCTTCCCCCTGATAAAGAACCATTGGATTGGAACACTAGGATGAAAATAGCTGCAGGGGCTGCAAAAGGACTAGAATACCTGCATGATAAGGCAAATCCTCCAGTCATTTATAGAGACTTCAAGTCATCTAATATATTACTCGACGAAGGATACCACCCAAAGCTTTCTGACTTTGGTCTTGCAAAGCTAGGACCTGTGGGTGACAAGTCACACGTTTCTACGCGTGTGATGGGAACTTATGGTTATTGTGCTCCTGAGTATGCTATGACTGGACAACTGACTGTCAAGTCTGACGTATACAGTTTTGGGGTGGTATTCTTAGAGCTGATTACAGGCCGTAAAGCAATTGACAGCACCCAACCACATGGAGAACAAAACCTTGTGACATGGGCACGTCCACTGTTCAATGACCGCAGGAAGTTCTCAAAGCTGGCTGATCCAAGGCTGCAGGGGAGGTTTCCTATGCGGGGTCTTTACCAGGCTCTAGCTGTGGCATCCATGTGCATCCAAGAATCCGCTGCCACACGTCCTCTGATTGGGGATGTGGTGACAGCCCTCTCTTATTTGGCCAACCAGGCATATGACCCCAACAATGCTGGGCATGGTTATAGGGGTTCTGGTGATGACAAAAGGAACAGAGNNNNNNNNNNGAAAGGTGCAAGATTATTGAAAAATGATGAAGCTGGAGGATCTGGACGCAGATGGGACTTGGAAGGATCTGAGAAAGATGAGTCTCCCAGAGAAACTGCGAGGATGTTGAACAGAGATCTTGACAGAGAACGTGCTGTGGCTGAAGCCAAAATGTGGGGAGAGAACTGGAGAGAGAAAAGAAGACAGAGTTTGCAACCCGGAAGTTTTGATGCTACTAATGCATAG 1431 0.4766 MGCFSCFDSREDQKLNPHGEHDHDHDHLRKQHQQHPHPSNPALPSHISRLPSGADKLRSRSNGGSKRELPAPKDGSGGQIAAQTFTIRELAAATKNFRPESFIGEGGFGRVYKGKLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQAYDPNNAGHGYRGSGDDKRNRXXXXKGARLLKNDEAGGSGRRWDLEGSEKDESPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSLQPGSFDATNA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90627g00063 476 PANTHER OS07G0668900 PROTEIN 3 383 - -
Stsc90627g00063 476 FunFam Serine/threonine-protein kinase PBS1 174 388 - -
Stsc90627g00063 476 FunFam Serine/threonine-protein kinase PBS1 70 173 - -
Stsc90627g00063 476 Pfam Protein kinase domain 100 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90627g00063 476 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Stsc90627g00063 476 MobiDBLite consensus disorder prediction 8 80 - -
Stsc90627g00063 476 MobiDBLite consensus disorder prediction 412 466 - -
Stsc90627g00063 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Stsc90627g00063 476 MobiDBLite consensus disorder prediction 11 33 - -
Stsc90627g00063 476 ProSiteProfiles Protein kinase domain profile. 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90627g00063 476 Gene3D Phosphorylase Kinase; domain 1 71 173 - -
Stsc90627g00063 476 SUPERFAMILY Protein kinase-like (PK-like) 82 369 IPR011009 -
Stsc90627g00063 476 Gene3D Transferase(Phosphotransferase) domain 1 174 387 - -
Stsc90627g00063 476 MobiDBLite consensus disorder prediction 382 476 - -
Stsc90627g00063 476 CDD STKc_IRAK 103 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90627g00063 Stsc-Chr90627 335721 340953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90627g00063 1 374 Glycoside Hydrolase AT3G07070 63.588 8.22e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc90627g00063 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90627g00063 K13430 - pvy:116140735 813.913