Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90627g00057 ATGGCATCATCACTGGAGGAGCTACTTGCCAAGGAAGGGTTCAAAGGAATAACAAAATCAGTGGCAAGGACTAGATCATCCTTTCACCATGGTGTTTTGACTGAGCCAATTTTCTCTCGGGACGAGCCAAGGAGACTCTCTGTATCGACTGATGGAATTACAAGGCACAGAACAAACTCTGACTCCTCTCCCTTTCACTTTCAGAGTCGAAGCGGACTATCGAAGAGCGATAGTGCTAATAGCAGGAGGCCAAGGGATAAGCTCTTTCTGAGAGACAGAATAATACATCAACAATCCAACTATGAAACTGCCCAGAAACCTTCTGAGAACACAAGTGACATGCCAAGGTACGAGACTAATAATGCAGAAAGAGGCAAAGAAAAGGATTTGGATCAGGTTGTGGAAAAGCAAATCTCATACACAAGATCAACTAGCAAAAGCTTTGAAGACAGCAACAACCAAAAGAATCAAGATCGCTACATTCAATCGGCTTCTAATTTTGCTCTTGATCAAGTTGTTGTCCAAGCACTAGTTTCCATTCTGAATGGATACATCAAAAGTTTTCTAAGAGATGAGGATTTCAGGGCTACACTGCGTCACAATTGTTTCTCCTCTTTGAACTTCATTGAGCTGAGAGAAGAGAACAATACCGAGATCAAAATCATAACAAGCCTTGAACAAGCAATCGAGACCATTGAGCAAACTGCAGAGCAGTCTGCACCTTCCACACATATGAAAAGAGCCACAATGCAGCTTAGCATCATCACAGGCCTGAGTTTAAATGATTTGAAGCACGGTTTTACATGCGGGATCCCCAATTATAAATTGTCAGCCTGTGCTCATCTTTATCTCAGTGTGGTATATGTAATACAGGGAAAAAGCAAGGTGTCTGCAAAGCATCTATTGCAAGTGTTCTGTGATTCGCCTTATCAGGCACGATCGATATTGTTGCCTGAACTCTGGGAGCAACTATTTGCTCCACAACTTACCCACTTGAGGACATGGTACAACAAAGAAGCTGAGATTTTAGCAAATACACCAAACCGAACAAGGAAGATGAAGCTTCTTCAACAAGTGTATAGTGAACATATGGATTCCGGTACTCGTATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTTGAGCCTCCAGCTATTCCTTCCATTAGCGTTCCATCAATATCACTTGGTCATTCTTCAGAGTCCGCTACCTCCACCGAACCGTTCTCTCCCCAGCCAATGGTCAGCAAGAAACTATACGATTCTGTCTTTAGTAGCTCCAGCAAAACCAAAGTTTATGATGCTGAAGATAACATACAAGTGTTTATCCCAGGCTCTTATAGTTCTACTATTGTTAAACAAACATTGACATATGAGTCTGAAACAACTAAAATTACAGATCAGGATATTGTAGATTTCGCTCTAAGTTTACCAATTGAATCACTCAGTGAGAAAGGAACTCCATTTACATCTGTAGAAGAATCTAAGAAGTGTGATCTCAGCAATAACATTGACAACCCCTTCTCCACAAAAACTAATTTAGACAGCTACATAGTGGATGCTCTACCATTTGGCAAGGAAGATGAACTTACACTCATAAAGCCAAACAAGATAAGGTCTGATCTTGCAGCATCATGTTCTCCAAACATTCCACCCGAATTTCTTTGTCCTCTTACGGGAACTGTCTTTGAGGAACCAGTCACCCTGGAGACTGGTCAAACCTATGAAAGAGAAGCCATCAAGGCGTGGTTTGAGAAGGGAAACAGAACATGCCCGGTAACTGGAAATACTTTAGAATATGTGGCTATGCCGCTTACCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAAGCTTTGATCATCTTCTAAATATTGCTTCTCAAACAGTTGGAAACTCAAAGGAACTTAGTTCCAGAAATGAAGATGAAGTTGCTGTTTTCAAGTTAGAGAGTTTCCTGTCTTCTTTCAATGAAGAGGAGAAAACAACTTATGCCAAGTATCTCATCTCTTTAGGAGTTCTATCATTTCTTTTTAGGAGGTTTGAACTGGGAAATATGGAGGAAAAATCAAGTGTGGTTTCACTCTTGTTAATTTGTATTTTAGCAGACTCTAGCTGCATATATCGGATAGCAGAAAATGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAGGAGGTTACTCCGTTAACAAATGCAATATTATTGCTTACTGAGCTTTCATCCATGAAAAGGAGAAAGGATGTTACATCATTCATCAGCGACTTGGTGGGTGAAGATGTTTTCAAAACATTGCGCATTCTACTCAAGTATCTTAACAAATCTAGTTCACATGAAAAGCCCCTAACCGCCGTTCTGTTGCTACACTTCGATCTACTGGTTGAGCCCCAAAAGTTTAGCATATACAGAGAGGTTGCAGTGAATGTCATAGCGACGGCACTTGATGCCAGCTTAAATGATGAGAAGACCCGAGTGGAGTGTTGCAGAGCACTCCTAGTTTTGTGTGGGCACTTTTCCTCTAATGGGAGGATACTGATCAAGTCTAGTACCTTGGAAGAAGCAGACTACAATATCAACACATCGGAAGTAAGACTTCAAGGCAGTGAAGAAGAGGGTCTACACTGGGATCAAGCAACAACTTTGTCTGAAGATGAAGAAGCAATGGGAGAAGAGCTGCTGAGGAACTTGTTAGAATCACTAGTTGGAGATGGAGATAGCCCATTTTTGAACAACTTATGTGGATGCCTAGATTCTAGACACCTAGATTTGGTGAGAGCGTGTCTAGTAACGGTTAAATGGTTGAGCTCCTCACTCTCCAAGATAATGAATGTGGGATTTCATCTTCTTGCCTTTTTAGCCATCATCACTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCATCAGTGTCCTTGCTTAATTTCAAATGCAGAACTCTAATGAAGACAATGGCAGAAGATATTGCTCCCCTTCTTCATAGGCTTGTTGATGTAACATGGACTGCTAAGCAGCTGCATGCCATTGTGTCTGGGGAAAATCTGTAG 3078 0.412 MASSLEELLAKEGFKGITKSVARTRSSFHHGVLTEPIFSRDEPRRLSVSTDGITRHRTNSDSSPFHFQSRSGLSKSDSANSRRPRDKLFLRDRIIHQQSNYETAQKPSENTSDMPRYETNNAERGKEKDLDQVVEKQISYTRSTSKSFEDSNNQKNQDRYIQSASNFALDQVVVQALVSILNGYIKSFLRDEDFRATLRHNCFSSLNFIELREENNTEIKIITSLEQAIETIEQTAEQSAPSTHMKRATMQLSIITGLSLNDLKHGFTCGIPNYKLSACAHLYLSVVYVIQGKSKVSAKHLLQVFCDSPYQARSILLPELWEQLFAPQLTHLRTWYNKEAEILANTPNRTRKMKLLQQVYSEHMDSGTRIFAVYYKDWLTEGVEPPAIPSISVPSISLGHSSESATSTEPFSPQPMVSKKLYDSVFSSSSKTKVYDAEDNIQVFIPGSYSSTIVKQTLTYESETTKITDQDIVDFALSLPIESLSEKGTPFTSVEESKKCDLSNNIDNPFSTKTNLDSYIVDALPFGKEDELTLIKPNKIRSDLAASCSPNIPPEFLCPLTGTVFEEPVTLETGQTYEREAIKAWFEKGNRTCPVTGNTLEYVAMPLTNLILKRLIDNWKSESFDHLLNIASQTVGNSKELSSRNEDEVAVFKLESFLSSFNEEEKTTYAKYLISLGVLSFLFRRFELGNMEEKSSVVSLLLICILADSSCIYRIAENVNRKCLLELLHSKEVTPLTNAILLLTELSSMKRRKDVTSFISDLVGEDVFKTLRILLKYLNKSSSHEKPLTAVLLLHFDLLVEPQKFSIYREVAVNVIATALDASLNDEKTRVECCRALLVLCGHFSSNGRILIKSSTLEEADYNINTSEVRLQGSEEEGLHWDQATTLSEDEEAMGEELLRNLLESLVGDGDSPFLNNLCGCLDSRHLDLVRACLVTVKWLSSSLSKIMNVGFHLLAFLAIITQLKGILENGELELKTLASVSLLNFKCRTLMKTMAEDIAPLLHRLVDVTWTAKQLHAIVSGENL 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90627g00057 1025 SMART Ubox_2 555 619 IPR003613 GO:0004842|GO:0016567
Stsc90627g00057 1025 SUPERFAMILY ARM repeat 656 986 IPR016024 -
Stsc90627g00057 1025 Pfam U-box domain 552 622 IPR003613 GO:0004842|GO:0016567
Stsc90627g00057 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 606 IPR013083 -
Stsc90627g00057 1025 ProSiteProfiles U-box domain profile. 551 626 IPR003613 GO:0004842|GO:0016567
Stsc90627g00057 1025 MobiDBLite consensus disorder prediction 44 133 - -
Stsc90627g00057 1025 PANTHER OS04G0584500 PROTEIN 546 1023 - -
Stsc90627g00057 1025 Gene3D - 612 1019 IPR011989 -
Stsc90627g00057 1025 MobiDBLite consensus disorder prediction 96 118 - -
Stsc90627g00057 1025 SUPERFAMILY RING/U-box 549 622 - -
Stsc90627g00057 1025 MobiDBLite consensus disorder prediction 79 93 - -
Stsc90627g00057 1025 MobiDBLite consensus disorder prediction 52 78 - -
Stsc90627g00057 1025 MobiDBLite consensus disorder prediction 119 133 - -
Stsc90627g00057 1025 CDD RING-Ubox_PUB 553 601 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90627g00057 Stsc-Chr90627 308999 313415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90627g00057 540 619 U-box Gene Family AT5G42340 42.500 1.54e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90627g00057 - - ccaj:109801846 1233.39