Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90627g00055 ATGGCATCAACATCTTGTGTGAGTAACATCCCATTATTACCCACACTGACTTGGAACAATAACTCTCATCAAAATCCTGCACCACTTGCAAAGTATGAGGAGGTTACAACAAATTCCAAGCTCTTCATGAGTACTTTAGAGAAGCTCCATGCTGATATGGGCACTAAATTCATGATACCCACTATTGGAGGAAAAAAATTGGATTTGTTTCACCTCTTCATTGAAGTGACTTCTCGAGGAGGGATTGAGAAGATTATCAAAGAGAGAAGATGGAAAGAAGTAACTCAAACTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGCAAGTACTACTCTTCATTGTTTTACCACTATGAACAAATTTACTATTTTCGAGTCGTGAGTGGATGGAACCCTGGTCAATTTCAATCAAACATTTCGACTCCCATTCGAAGAGCACAATTTTCACAACCTTCTCTTACCTTCCAACATGCAAGTAGAGTTGACGCTGCTTCCGAATCATCTAAAGGAACAAGATCTTCAACAACAGTGGTTGGAGTCATCGATGCAAAATTTAAAAGTGGATATCTAAATTTTGTTTCAATAGGTTCAGAGGTATATCAAGAAAAGGTTTTAGGAGATAAAGAAAGATACAAAGAAGAAATGAAAGATTATCATCAGAAACTAAGAATGATGAGCAACAATAATAATTCTTTATTGCAACAAGGGTTTCATGAAGCGGATAAGAATTTGGTAGATATGAATATAAGAATGGATGAGAACGATGAAGGCTCTCTTCAAAGTCAAACTCCTAAAGAGGAGAGCACTTCTGGCGGAAGCGAGAACGGGAATGACATTAATATGGATTCTCCTCCTCCTCCTTCGGGAATCCTCCGCAACCTATATTTTTTACCTTAA 909 0.3751 MASTSCVSNIPLLPTLTWNNNSHQNPAPLAKYEEVTTNSKLFMSTLEKLHADMGTKFMIPTIGGKKLDLFHLFIEVTSRGGIEKIIKERRWKEVTQTFNFPSTATNASFVLRKYYSSLFYHYEQIYYFRVVSGWNPGQFQSNISTPIRRAQFSQPSLTFQHASRVDAASESSKGTRSSTTVVGVIDAKFKSGYLNFVSIGSEVYQEKVLGDKERYKEEMKDYHQKLRMMSNNNNSLLQQGFHEADKNLVDMNIRMDENDEGSLQSQTPKEESTSGGSENGNDINMDSPPPPSGILRNLYFLP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90627g00055 302 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 202 272 - -
Stsc90627g00055 302 Gene3D - 20 133 IPR036431 GO:0003677
Stsc90627g00055 302 SMART bright_3 37 128 IPR001606 GO:0003677
Stsc90627g00055 302 SUPERFAMILY ARID-like 29 129 IPR036431 GO:0003677
Stsc90627g00055 302 MobiDBLite consensus disorder prediction 259 286 - -
Stsc90627g00055 302 MobiDBLite consensus disorder prediction 259 302 - -
Stsc90627g00055 302 Coils Coil 212 239 - -
Stsc90627g00055 302 SMART ARID_2 33 123 - -
Stsc90627g00055 302 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Stsc90627g00055 302 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
Stsc90627g00055 302 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90627g00055 Stsc-Chr90627 289090 291238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90627g00055 1 202 ARID Transcription Factor Family AT1G04880 51.429 1.49e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc90627g00055 ARID 8.4e-19 CL0123