Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90627g00053 ATGCCGGAGCTTCGTAGTGGACCGCGGCGTGGTCGTGCTCAGGTAGGCCGTAAAACCGCTGAACCAACGTCTCCGGCGACCAACTACGTGAAGACTCGAGCTGCGATCGCCAGGGCTGCTGCGGCAACGGCGGCGGCGGCCGTGGAGAGGCCCAGGACCCGCTTAGCGGCGAAGAAATTGGAGCAGGAGGAGAAGCCAGTAATCGTGATATCAGAGGAGGAGGAGGAGGAGGAAGAGGAAGCCGAGAGCGACGTAGAGCGCGCGAAGAATAAGAAAAGCGAAGAGCGGATTGAAGTCGGCGTAATGGGTGACGAGAGTGGCGGGTTGAGTGCGAACAAGGGCGTTGCTCAAGAGGATGAGGGAAACACAGCTCCTTTTCCGGAGAGGGTTCAAGTGGGAGGATCACCTGTCTACAAGGTGGATAGAAAGCTGGGAAAAGGTGGCTTTGGTCAAGTCTTTGTTGGCCGTCGAGTTAGTGGTGGTAATGATCGCACTAGTGGCCCCGGGGCTACTGAGGTGGCTCTGAAATTTGAACATAGGAATAGTAAAGGCTGTAATTATGGCCCTCCGTATGAGTGGCAAGTTTACAACACCCTTGGTGGCAGTCATGGAATACCCAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAACTCTTCAAACCAGGCGATGCCTGCAGAAATGGTTGCATGTATAGCTGTTGAATCCTTGTCAATCCTGGAGAAAATGCATTTAAGAGGATATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTACTAGGCCAGCCAGGGACACCACAAGAGAAGAAATTGTACCTTGTTGACCTTGGATTAGCAACTAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCAGATATGTTTAGTGTTCATGCTCACTTGGGAAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTGGCATATACACTCATCTTCCTTCATAAAGGGCGCTTACCATGGCAAGGTTATCAGGGTGATAATAAGTCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCACCAGAGATGCTATGTTGCTTCTGCCCTCCTCCTTTTAGGCAATTTCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCAAACTATTCCAAGCTAATATCTCTTTTTGATGGTATGCTTGGTCCAAATCCTGCATTGCGGCCGATTAACACTGACGGTGCTCAAAAGGTCGGGCAAAAGCGGGGTAGGTTGAATATTGAGGAAGAGGATGATTCACAACCCAAAAAGAAGGTCCGGTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCCAGATTACCAATGAAACAAAGGTATCACTATAATGTAGCTGATGCAAGACTAGCACAGCATGTTGAGAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTTGCTTCTTGTTCCAATCTCTGGGCACTTATAATGGATGCTGGGACTGGTTTTACAACTCAAGTTTACAAGTTGTCACCTTTTTTCTTGCACAAGGAATGGATTATGGAGCAGTGGGAAAAGAACTATTATATTACTTCAATAGCTGGTGCTAATAATGGAAGCTCTCTTGTGGTGATGTCAAAAGGTTTGTTTGGTTTGTTAAGTAACAAATGA 1704 0.4671 MPELRSGPRRGRAQVGRKTAEPTSPATNYVKTRAAIARAAAATAAAAVERPRTRLAAKKLEQEEKPVIVISEEEEEEEEEAESDVERAKNKKSEERIEVGVMGDESGGLSANKGVAQEDEGNTAPFPERVQVGGSPVYKVDRKLGKGGFGQVFVGRRVSGGNDRTSGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSNQAMPAEMVACIAVESLSILEKMHLRGYVHGDVKPENFLLGQPGTPQEKKLYLVDLGLATKWRDTSSGQHVEYDQRPDMFSVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTDGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTTQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGLFGLLSNK 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90627g00053 567 Pfam Protein kinase domain 138 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90627g00053 567 MobiDBLite consensus disorder prediction 1 29 - -
Stsc90627g00053 567 SUPERFAMILY Protein kinase-like (PK-like) 138 417 IPR011009 -
Stsc90627g00053 567 ProSitePatterns Protein kinases ATP-binding region signature. 144 176 IPR017441 GO:0005524
Stsc90627g00053 567 MobiDBLite consensus disorder prediction 68 83 - -
Stsc90627g00053 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Stsc90627g00053 567 ProSiteProfiles Protein kinase domain profile. 138 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90627g00053 567 MobiDBLite consensus disorder prediction 68 93 - -
Stsc90627g00053 567 Coils Coil 71 98 - -
Stsc90627g00053 567 SMART serkin_6 138 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90627g00053 567 FunFam casein kinase 1-like protein HD16 111 449 - -
Stsc90627g00053 567 Gene3D Transferase(Phosphotransferase) domain 1 112 450 - -
Stsc90627g00053 567 PANTHER CASEIN KINASE-RELATED 135 413 - -
Stsc90627g00053 567 CDD STKc_CK1 138 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90627g00053 Stsc-Chr90627 281429 285273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90627g00053 97 404 MAP Kinase Kinase Kinase AT4G08500 21.835 9.39e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Stsc90627g00053 Pkinase 5.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90627g00053 - - gmx:100819969 956.822