Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90627g00020 ATGAAGATTAACGTGAAGACCCTTAAAGGAACTCACTTTGAAATCCATGTGCAACCGCAAGACACGGTTGCTGATGTAAAGAGAAACATAGAGGGGAATCAAGGTGCTCAAGTTTATCCAGCTGCACAACAAATGCTTATCCATCAGGGTAAAGTGCTTAAGGATGACACAACCCTTGAAGACAATAAAGTTGCTGAGAATAGTTTTGTGGTGATCATGCTATCCAAGAGCAAGGTATCATCAGGTGAAGCCTCAACCACATCATCTGCATCCGCAAAACAGGCAGCTCAACCGGCAAGTTCTTTGCCTCCCACTTCATTGCCATCCTCAACATCTCAACCTCCTGCTTCAACTGTAGGACAGGGAGTATCCAATTCTGAGCAAAATCCTGTTACAACTCCTTCTAGTGATGTGGCCGGCATTTATGGCGAAGCAGCATCAAACCTCATTTCAGGTAGCAATTTGGAATCGACTATTCAACAGATACTAGACATGGGGGGAGGTAGTTGGGATCGAGATACCGTTATCCGTGCTCTTCGTGCAGCATTTAACAATCCTGAAAGAGCTGTTGAGTATCTCTATTCAGGTATTCCTGAACAAGCTGAAGTGCCACCAGTTTCCAGAGCCCCCACTGTTGGGCAGGCAGCGAACCCTTTAGGCGAGGCTCAGGGTCAAGCCCAAGATGCACCTTCTGGTGGGCCCAACACCAACCCGCTCAACCTCTTTCCCCAGGGTATTCCTGATATGGGTGCAAATGAAAATGCGGGCGACTTGGATTTTCTGCGAAACAGTCAACAGTTTCAAGCCCTGAGAGCGATGGTTCAAGCAAATCCCCAGATTTTGCAGCCCATGCTACAGGAATTGGGTAGACAAAATCCACACCTAATGCAGCTCATCCAAGAGCATCAGGCTGATTTCTTACGCTTGATAAATGAACCTGATGGAGAAGAGAATCTACCAAGTGATTTGGCTGCTGCAATGCCCCAGACCATCACTGTCACCCCAGAAGAGAATGAGGCTATTCAAAGGCTTCAAGATATGGGATTTGATAGAGATCTTGTATTGGAGGTGTTCTTTGCATGCAACAAAAATGAGGAGCTGGCAGCCAATTATCTTTTGGATCACCATAATGAATTTGAAGACTAA 1146 0.4607 MKINVKTLKGTHFEIHVQPQDTVADVKRNIEGNQGAQVYPAAQQMLIHQGKVLKDDTTLEDNKVAENSFVVIMLSKSKVSSGEASTTSSASAKQAAQPASSLPPTSLPSSTSQPPASTVGQGVSNSEQNPVTTPSSDVAGIYGEAASNLISGSNLESTIQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEVPPVSRAPTVGQAANPLGEAQGQAQDAPSGGPNTNPLNLFPQGIPDMGANENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGRQNPHLMQLIQEHQADFLRLINEPDGEENLPSDLAAAMPQTITVTPEENEAIQRLQDMGFDRDLVLEVFFACNKNEELAANYLLDHHNEFED 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90627g00020 381 MobiDBLite consensus disorder prediction 82 138 - -
Stsc90627g00020 381 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 370 - -
Stsc90627g00020 381 Pfam XPC-binding domain 258 313 IPR015360 GO:0003684|GO:0006289|GO:0043161
Stsc90627g00020 381 SMART ubq_7 1 75 IPR000626 GO:0005515
Stsc90627g00020 381 FunFam UV excision repair protein RAD23 1 80 - -
Stsc90627g00020 381 NCBIfam UV excision repair protein Rad23 1 380 IPR004806 GO:0006289
Stsc90627g00020 381 MobiDBLite consensus disorder prediction 212 238 - -
Stsc90627g00020 381 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 153 196 IPR015940 -
Stsc90627g00020 381 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 335 375 IPR015940 -
Stsc90627g00020 381 SMART uba_6 155 195 IPR015940 -
Stsc90627g00020 381 SMART uba_6 337 374 IPR015940 -
Stsc90627g00020 381 FunFam UV excision repair protein RAD23 B 249 314 - -
Stsc90627g00020 381 CDD Ubl_Rad23 1 74 - -
Stsc90627g00020 381 FunFam UV excision repair protein RAD23 homolog 148 198 - -
Stsc90627g00020 381 Gene3D - 1 80 - -
Stsc90627g00020 381 SUPERFAMILY XPC-binding domain 255 317 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc90627g00020 381 SUPERFAMILY UBA-like 151 209 IPR009060 GO:0005515
Stsc90627g00020 381 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Stsc90627g00020 381 Gene3D - 329 377 - -
Stsc90627g00020 381 Gene3D - 249 314 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc90627g00020 381 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Stsc90627g00020 381 SUPERFAMILY UBA-like 319 378 IPR009060 GO:0005515
Stsc90627g00020 381 MobiDBLite consensus disorder prediction 82 136 - -
Stsc90627g00020 381 SMART CBM 256 299 IPR006636 -
Stsc90627g00020 381 PRINTS DNA repair protein Rad23 signature 363 378 IPR004806 GO:0006289
Stsc90627g00020 381 PRINTS DNA repair protein Rad23 signature 331 347 IPR004806 GO:0006289
Stsc90627g00020 381 PRINTS DNA repair protein Rad23 signature 284 306 IPR004806 GO:0006289
Stsc90627g00020 381 PRINTS DNA repair protein Rad23 signature 348 362 IPR004806 GO:0006289
Stsc90627g00020 381 CDD UBA1_Rad23_plant 149 198 - -
Stsc90627g00020 381 FunFam UV excision repair protein RAD23 homolog 328 376 - -
Stsc90627g00020 381 Gene3D - 148 198 - -
Stsc90627g00020 381 Pfam UBA/TS-N domain 155 193 IPR015940 -
Stsc90627g00020 381 Pfam UBA/TS-N domain 336 372 IPR015940 -
Stsc90627g00020 381 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90627g00020 Stsc-Chr90627 96195 99498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90627g00020 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 4.28e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90627g00020 K10839 - cit:102614644 501.516