Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90627g00019 ATGAAGATTAATGTCAAGACTCTCAAAGGAACCCACTTCCGAATCGAAGTGGAGCCGCAAAACACGGTTGCTGATGTTAAGAGAAATATAGAGGGAGCACAAGGTGCTGATGTTTATCCAGCTTCACAACAAATGCTTATTCATCAGGGGAAAGTGCTTAAAGATGACACAACCCTTGAAGACAATAAAGTTGCTGAGAATAGTTTTGTGGTGATCATGTTATCTAAGAGTAAGGTATCATCGAGTGGTACCTCATCTGCATCAGCTGCTTCTGCAAACCAGGCAACTCAACCTGCAAGTTCTTTGCCTCCCGCTTCGGTGCCATCCTCAACATCGCAACCTCCTACTTCGACTGTTGGACAAGGAGTATCCAATCTTGAGCAAATTCCTGTCACAAATCCTGCTAGTGATACAGCTGGCATCTATGGCCAAGCAGCATCTAACCTGATTTCAGGAAGCAACTTAGAATCGACTATTCAACAAATACTAGAAATGGGTGGGGGAAGTTGGGATCGAGATACTGTTATCCGGGCCCTTCGTGCAGCATTTAACAATCCTGAAAGAGCTATTGAGTATCTCTATTCAGGCATTCCTGAGCAAGCTGAAGTACCAGCAGTTGCCAGATCCTCCGCTGTTGGGCTGGCAGCAAACCCTTCCGTACAGGCCCAGCCCCAGCAGCCTCAAGCCCAAGTTGCTCCTTCTGGTGGGCCCAACACCAACCCACTCAACCTCTTTCCCCAGGGTATTCCTGATATGGGTGCAAATGAAAATGCGGGCGACTTGGATTTTCTGCGAAACAGTCAACAGTTTCAAGCCCTGAGAGCGATGGTTCAAGCAAATCCCCAGATTTTGCAGCCCATGCTACAGGAATTGGGTAGACAAAATCCACACCTAATGCAGCTCATCCAAGAGCATCAGGCTGATTTCTTACGCTTGATAAATGAACCTGATGGAGAAGAGAATCTACCAAGTGATTTGGCTGCTGCAATGCCCCAGACCATCACTGTCACCCCAGAAGAGAATGAGGCTATTCAAAGGCTTCAAGATATGGGATTTGATAGAGATCTTGTATTGGAGGTGTTCTTTGCATGCAACAAAAATGAGGAGCTGGCAGCCAATTATCTTTTGGATCACCATAATGAATTTGAAGACTAA 1155 0.4606 MKINVKTLKGTHFRIEVEPQNTVADVKRNIEGAQGADVYPASQQMLIHQGKVLKDDTTLEDNKVAENSFVVIMLSKSKVSSSGTSSASAASANQATQPASSLPPASVPSSTSQPPTSTVGQGVSNLEQIPVTNPASDTAGIYGQAASNLISGSNLESTIQQILEMGGGSWDRDTVIRALRAAFNNPERAIEYLYSGIPEQAEVPAVARSSAVGLAANPSVQAQPQQPQAQVAPSGGPNTNPLNLFPQGIPDMGANENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGRQNPHLMQLIQEHQADFLRLINEPDGEENLPSDLAAAMPQTITVTPEENEAIQRLQDMGFDRDLVLEVFFACNKNEELAANYLLDHHNEFED 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90627g00019 384 MobiDBLite consensus disorder prediction 217 240 - -
Stsc90627g00019 384 PRINTS DNA repair protein Rad23 signature 334 350 IPR004806 GO:0006289
Stsc90627g00019 384 PRINTS DNA repair protein Rad23 signature 366 381 IPR004806 GO:0006289
Stsc90627g00019 384 PRINTS DNA repair protein Rad23 signature 287 309 IPR004806 GO:0006289
Stsc90627g00019 384 PRINTS DNA repair protein Rad23 signature 351 365 IPR004806 GO:0006289
Stsc90627g00019 384 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 153 196 IPR015940 -
Stsc90627g00019 384 FunFam UV excision repair protein RAD23 B 252 317 - -
Stsc90627g00019 384 Pfam UBA/TS-N domain 155 193 IPR015940 -
Stsc90627g00019 384 Pfam UBA/TS-N domain 339 375 IPR015940 -
Stsc90627g00019 384 SUPERFAMILY UBA-like 151 206 IPR009060 GO:0005515
Stsc90627g00019 384 Pfam XPC-binding domain 261 316 IPR015360 GO:0003684|GO:0006289|GO:0043161
Stsc90627g00019 384 Gene3D - 1 80 - -
Stsc90627g00019 384 FunFam UV excision repair protein RAD23 1 80 - -
Stsc90627g00019 384 Gene3D - 332 380 - -
Stsc90627g00019 384 FunFam UV excision repair protein RAD23 homolog 148 198 - -
Stsc90627g00019 384 Gene3D - 252 317 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc90627g00019 384 CDD Ubl_Rad23 1 74 - -
Stsc90627g00019 384 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Stsc90627g00019 384 SMART uba_6 155 195 IPR015940 -
Stsc90627g00019 384 SMART uba_6 340 377 IPR015940 -
Stsc90627g00019 384 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Stsc90627g00019 384 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 338 378 IPR015940 -
Stsc90627g00019 384 NCBIfam UV excision repair protein Rad23 1 383 IPR004806 GO:0006289
Stsc90627g00019 384 SUPERFAMILY UBA-like 322 381 IPR009060 GO:0005515
Stsc90627g00019 384 CDD UBA1_Rad23_plant 149 198 - -
Stsc90627g00019 384 SMART CBM 259 302 IPR006636 -
Stsc90627g00019 384 Gene3D - 148 198 - -
Stsc90627g00019 384 MobiDBLite consensus disorder prediction 82 125 - -
Stsc90627g00019 384 FunFam UV excision repair protein RAD23 homolog 331 379 - -
Stsc90627g00019 384 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 373 - -
Stsc90627g00019 384 SMART ubq_7 1 75 IPR000626 GO:0005515
Stsc90627g00019 384 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Stsc90627g00019 384 SUPERFAMILY XPC-binding domain 258 320 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90627g00019 Stsc-Chr90627 91675 99498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90627g00019 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.189 9.16e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90627g00019 K10839 - cit:102614644 497.664